Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o19r
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615           28   7.0  
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273...    28   7.0  

>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
          Length = 390

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 152 WLVAFKLLMSMGSGYNSKLDEPTIPSTHHINK 57
           W + F LL S  + + S++DE    S HH+N+
Sbjct: 202 WKIYFTLLESNLTEHTSEVDENVPGSVHHVNE 233


>04_04_0008 +
           22125707-22125828,22127122-22127197,22127297-22127367,
           22127502-22127995,22128079-22128239,22128329-22128532,
           22129292-22129526,22129996-22130591
          Length = 652

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -1

Query: 278 QEFFFYFMRVRETYR-ICNGSLNNNLKRNHGTVVLIIRTHVSRWLVA--FKLLMSMGSGY 108
           +EF  + ++ RE  R +  G L   LK   GT+  +I T  S W+ +  F+L + + SG+
Sbjct: 173 EEFENHIVKEREGKRPLLTGDLQVTLKEGVGTIGELIFTDNSSWIRSRKFRLGLRVSSGF 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,435
Number of Sequences: 37544
Number of extensions: 290963
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)