Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o19r
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81562-2|CAB04559.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 419 LHWSLMFQYPFLVCLFYQQRNL-YQDCCFQSYRLLLQVEY 303
           + W L+  Y  ++C+FY    L +  CC + YR +L+++Y
Sbjct: 211 IDWPLLRFYK-IMCVFYSALALIWVYCCIKYYRDILRIQY 249


>Z81562-2|CAB04559.1|  331|Caenorhabditis elegans Hypothetical
           protein K03D7.4 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/99 (24%), Positives = 40/99 (40%)
 Frame = -1

Query: 410 SLMFQYPFLVCLFYQQRNLYQDCCFQSYRLLLQVEYLLVSNNLNQEFFFYFMRVRETYRI 231
           ++  Q  FL+ L Y Q   +   CF  Y  +L   +    N +   F F F+  RE+  +
Sbjct: 225 TMQLQLKFLMTL-YAQSGAFFLACFTPYVYILYSCFTNYYNPIANNFIFIFVASRES--M 281

Query: 230 CNGSLNNNLKRNHGTVVLIIRTHVSRWLVAFKLLMSMGS 114
           C   L    K     V+ I R  +  W +   +   +G+
Sbjct: 282 CTLILLFAYKPYKKAVISIFRELLPSWCLTQPVANRIGT 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,513
Number of Sequences: 27780
Number of extensions: 306116
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)