Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o19r
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 544 IIRANN*RNNSMKFNKKNILHQIN 615
           I   NN  +N+ K NKKN  +Q N
Sbjct: 423 IQNTNNQNDNNQKNNKKNANNQKN 446


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 512 SMNPRRQHSPKLYGRIIN 565
           S +P   HSP +YG  +N
Sbjct: 597 SKSPTLTHSPTMYGDALN 614



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 147 QPP*DMSSNDKYH 185
           + P D+SSNDK H
Sbjct: 263 EKPLDVSSNDKVH 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,368
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)