Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o19r
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51460.1 68414.m05792 ABC transporter family protein similar ...    35   0.067
At5g11130.1 68418.m01300 exostosin family protein contains Pfam ...    29   4.4  
At5g44490.1 68418.m05451 F-box family protein contains F-box dom...    28   7.7  

>At1g51460.1 68414.m05792 ABC transporter family protein similar to
           SP|Q9UNQ0 ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) {Homo sapiens};
           contains Pfam profile PF00005: ABC transporter
          Length = 678

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
 Frame = -1

Query: 338 FQSYRLLLQVEYLLVSNNLNQEFFFYFMRVRE--TYRICNGSLNNNLKRNHGTVVLIIRT 165
           ++  R+L Q  ++    N++++  +Y+MR+       IC GS+  N+ RNH  V  +   
Sbjct: 354 WKQLRILTQRSFI----NMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNV--MSTA 407

Query: 164 HVSRWLVAFKLLMSMGSGYNSKLDEPTIPSTHHIN 60
               ++  F   MS+G G+ S ++E  + S   +N
Sbjct: 408 ACGGFMAGFMTFMSIG-GFQSFIEEMKVFSRERLN 441


>At5g11130.1 68418.m01300 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 336

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 581 NLIKKTFYTKSIYK*KIFLLWSSWLEYSAKVRNLLYGGC 697
           NL K   YTK + K K  L  S W   S ++   LY GC
Sbjct: 206 NLPKTMNYTKMMDKAKFCLCPSGWEVASPRIVESLYSGC 244


>At5g44490.1 68418.m05451 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 386 LVCLFYQQRNLYQDCCFQSYRLLLQVEYLLVSNNLNQEFFFYFMRVRETYRICN 225
           +V LFY +R  +       +  + +V  +++S+       FYF+R   T + CN
Sbjct: 252 IVGLFYIERAFHNKVARNFFIGISRVRDMIISDRAMWFMSFYFLREESTPQFCN 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,857
Number of Sequences: 28952
Number of extensions: 266402
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)