Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o19f
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06820.1 68416.m00809 mov34 family protein similar to SP|P467... 87 1e-17
At1g80210.1 68414.m09387 expressed protein 65 4e-11
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta... 60 8e-10
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun... 60 1e-09
At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subun... 60 1e-09
At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subun... 60 1e-09
At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [H... 37 0.011
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H... 34 0.060
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi... 32 0.32
At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutas... 29 1.7
At5g02310.1 68418.m00154 eceriferum3 protein, putative similar t... 28 3.9
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 28 5.2
At4g13110.1 68417.m02043 BSD domain-containing protein contains ... 27 6.8
At5g51400.1 68418.m06372 expressed protein contains Pfam profile... 27 9.0
At4g03979.1 68417.m00566 hypothetical protein 27 9.0
At1g05080.1 68414.m00510 F-box family protein contains F-box dom... 27 9.0
>At3g06820.1 68416.m00809 mov34 family protein similar to SP|P46736
C6.1A protein {Homo sapiens}; contains Pfam profile
PF01398: Mov34/MPN/PAD-1 family
Length = 324
Score = 86.6 bits (205), Expect = 1e-17
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +1
Query: 343 LAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFAVFLTDQSTKAP 522
+ G+ RV+GWYHSHPHITV PSHVD+ TQ+MYQ +D+ F+G+IF+ F ++ + K
Sbjct: 1 MTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCF-SEDANKVG 59
Query: 523 SVQITCFQS 549
+Q+ FQS
Sbjct: 60 RIQVIAFQS 68
>At1g80210.1 68414.m09387 expressed protein
Length = 354
Score = 64.9 bits (151), Expect = 4e-11
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Frame = +1
Query: 133 LSSDVALVCMQHALSTEKEEIMGLLIGEVH---DNGALVSIV-SSVILRRLDKKPDRVEI 300
+S DV L C+ HALSTE EEIMGLL+G++ D G+ +++ + R D++ DR +
Sbjct: 1 MSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASPQSRSDRQKDRND- 59
Query: 301 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 480
+ + PL + S P++ TQ+MYQ +D+ F+G+
Sbjct: 60 --------DINGQNYTGHWMVPLPSSYYRSSFPYV---------RTQAMYQLLDSGFIGL 102
Query: 481 IFAVFLTDQSTKAPSVQITCFQS 549
IF+ F ++ + K +Q+ FQS
Sbjct: 103 IFSCF-SEDANKVGRIQVIAFQS 124
>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
putative similar to 26S proteasome-associated pad1
homolog [Homo sapiens] GI:1923256, 26S proteasome,
non-ATPase subunit [Mus musculus] GI:2505940; contains
Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 308
Score = 60.5 bits (140), Expect = 8e-10
Identities = 45/145 (31%), Positives = 69/145 (47%)
Frame = +1
Query: 121 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 300
++V +SS L ++H + E+MGL++GE D V V + + + V +
Sbjct: 28 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYT----VRVVDVFAMPQSGTGVSV 83
Query: 301 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 480
V T + L + G+P VVGWYHSHP W S VD+ TQ ++ ++ V +
Sbjct: 84 EAVDHVFQTNMLDMLK-QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAV 142
Query: 481 IFAVFLTDQSTKAPSVQITCFQSIN 555
+ QS K V I F+SIN
Sbjct: 143 VVDPI---QSVKG-KVVIDAFRSIN 163
>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit
5A (CSN5A) / c-JUN coactivator protein AJH2, putative
(AJH2) COP9 complex subunit CSN5-2; identical to c-Jun
coactivator protein AJH2 GI:3641312 from [Arabidopsis
thaliana]; identical to cDNA CSN complex subunit 5A
(CSN5A) GI:18056660; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 358
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/147 (26%), Positives = 78/147 (53%)
Frame = +1
Query: 121 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 300
++V++S+ L + HA S EIMGL+ G+ + +V ++ + + + + +
Sbjct: 57 KRVKISALALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDD 116
Query: 301 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 480
+ E +V+ + + +LA G+ VVGWYHSHP W S +D++TQ + Q+ F+ +
Sbjct: 117 AYEYMVEYS-QTNKLA---GRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAV 172
Query: 481 IFAVFLTDQSTKAPSVQITCFQSINEG 561
+ ++ A V+I F++ ++G
Sbjct: 173 VID---PTRTVSAGKVEIGAFRTYSKG 196
>At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 351
Score = 59.7 bits (138), Expect = 1e-09
Identities = 40/147 (27%), Positives = 75/147 (51%)
Frame = +1
Query: 121 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 300
++V +S+ L + HA S EIMGL+ G+ + +V ++ + + + +
Sbjct: 57 KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSD 116
Query: 301 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 480
+ E +V+ + + +LA G+ VVGWYHSHP W S +D++TQ + Q+ F+ +
Sbjct: 117 AYEYMVEYS-QTSKLA---GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAV 172
Query: 481 IFAVFLTDQSTKAPSVQITCFQSINEG 561
+ ++ A V+I F++ EG
Sbjct: 173 VID---PTRTVSAGKVEIGAFRTYPEG 196
>At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 357
Score = 59.7 bits (138), Expect = 1e-09
Identities = 40/147 (27%), Positives = 75/147 (51%)
Frame = +1
Query: 121 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 300
++V +S+ L + HA S EIMGL+ G+ + +V ++ + + + +
Sbjct: 57 KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSD 116
Query: 301 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 480
+ E +V+ + + +LA G+ VVGWYHSHP W S +D++TQ + Q+ F+ +
Sbjct: 117 AYEYMVEYS-QTSKLA---GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAV 172
Query: 481 IFAVFLTDQSTKAPSVQITCFQSINEG 561
+ ++ A V+I F++ EG
Sbjct: 173 VID---PTRTVSAGKVEIGAFRTYPEG 196
>At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 507
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 319 QATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFA 489
QAT E + Q L +GW H+HP + + S +D+ T YQ M V I+ A
Sbjct: 388 QATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMA 444
>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 271
Score = 34.3 bits (75), Expect = 0.060
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 319 QATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFA 489
QA E + + + L VGW H+HP + S VDL T YQ M I+ A
Sbjct: 104 QAMNEVEVFSIQNERELYPVGWIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVA 160
>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family RNA
binding domains (aka PUM-HD, Pumilio homology domain) (8
copies at C-terminus)
Length = 961
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/69 (24%), Positives = 41/69 (59%)
Frame = +1
Query: 106 NFEMLQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKP 285
N + + + +S+V C++HA STE+E ++ ++G+ ++ L++++ + +K
Sbjct: 849 NVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKV 908
Query: 286 DRVEISEEQ 312
+EIS++Q
Sbjct: 909 --LEISKDQ 915
>At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutase 1
(GSA 1) / glutamate-1-semialdehyde aminotransferase 1
(GSA-AT 1) identical to GSA 1 [SP|P42799]
Length = 474
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 239 TSAPLS*TSPISKPMISSFSVDNACCIQTKATSDDKRTFCSISK 108
T+ S +S ISK +SS N CCI+ + D+K+ S+ K
Sbjct: 10 TALGFSCSSKISK-RVSSSPASNRCCIKMSVSVDEKKKSFSLQK 52
>At5g02310.1 68418.m00154 eceriferum3 protein, putative similar to
eceriferum3 GI:1669655 from [Arabidopsis thaliana]
Length = 2006
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -2
Query: 230 PLS*TSPISKPMISSFSVDNAC----CIQTKATSDDKRTFCS 117
P + SP+ + ++ S+DN C +QT T+D KR C+
Sbjct: 622 PSTGLSPLCGDIQTNLSLDNVCGPYGVVQTDVTADSKRVSCN 663
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 284 GFLSKRRSITDDTIETSAPLS*TS-PISKPMISSFSVDNAC 165
GFL K + + D+T+ LS P S+ + SF D+ C
Sbjct: 150 GFLDKNKEVDDNTVLFGEDLSWKKFPFSRNFLKSFIRDSTC 190
>At4g13110.1 68417.m02043 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 316
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/70 (30%), Positives = 38/70 (54%)
Frame = +1
Query: 172 LSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAA 351
LST+ E ++G ++ + G+ + +S+I R + PD +EI A+V +E L +
Sbjct: 32 LSTKSESVIGSYRRDLVEFGSELKKETSIIRRVASRLPDSLEIG------ASVASESLES 85
Query: 352 EVGQPLRVVG 381
VGQ + +G
Sbjct: 86 -VGQVIDDIG 94
>At5g51400.1 68418.m06372 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614
Length = 241
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 99 KYKF*NATKGPFIV*CCFGLYATCVVDRERRN 194
KY NA P +V CC A C RE +N
Sbjct: 161 KYHLQNAPCDPCMVHCCLHFCAVCQEHREMKN 192
>At4g03979.1 68417.m00566 hypothetical protein
Length = 261
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +1
Query: 76 TFNRITITNINFEM------LQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGAL 237
+F+++ +T+I F + + ++ + + + + H +S E E + I H+ +
Sbjct: 31 SFHKVYVTSITFRLRCQQRKIARLYIPEPILALIVSH-VSEEGIEALKNWIKSGHEGKSA 89
Query: 238 VSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELA 348
V ++ RLDK PD + +S V + ++ LA
Sbjct: 90 AFSVETLSRVRLDKSPDFINMSSPDSVHFSFFSKCLA 126
>At1g05080.1 68414.m00510 F-box family protein contains F-box domain
Pfam:PF00646
Length = 439
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 257 TDDTIETSAPLS*TSPISKPMISSFSVDNACCIQTKATSDDKRTFCSISKFI--FVIVMR 84
TD + +AP T I+ + SFS+++ C+Q AT D + KF+ F V+
Sbjct: 229 TDRCLVVNAPAVNTCQITDYSLESFSIEDMPCLQ-DATIDVDEAYHPDDKFLTSFSSVLS 287
Query: 83 LNVTL 69
L + L
Sbjct: 288 LRMHL 292
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,875,187
Number of Sequences: 28952
Number of extensions: 193198
Number of successful extensions: 519
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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