Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o18r
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    38   0.002
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    35   0.013
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    31   0.16 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    29   0.65 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.86 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.5  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   4.6  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   4.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   6.0  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   6.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.0  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -3

Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGAN 562
           AS   + +MPTFVF +NGK++D  +GAN
Sbjct: 67  ASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGAN 562
           A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 642 SEYNINSMPTFVFVKNGKKLDEFSG 568
           SEY+I   PT    KNGK++ ++SG
Sbjct: 88  SEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGAN 562
           A  +++N++P FV +   K L   SGAN
Sbjct: 66  AESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 405 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 494
           KFI D +N F+  I   Y F  F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 400 SSNSLQTLKTFFIHLLKTYTCFFFLIP 480
           SS    +L  +F+ L++ + CFFF+ P
Sbjct: 50  SSGPFISLSFWFLSLVRGFVCFFFMFP 76


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 381 QTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 503
           ++ + N   ++TD +NIF +F+ N   + F  + L  I  C
Sbjct: 71  KSSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 173  IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 262
            +G I HL K D+N  K   ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 360 FFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSI 494
           +F   +++T K     FI   KNIF  F     +FF F  IL SI
Sbjct: 84  WFPRNKIRTAKYTPIDFIP--KNIFLQFQNVANLFFLFLVILQSI 126


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 137 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 241
           K DG+      S GE++H  + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +3

Query: 342 ITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SL 521
           + T+ I+F   +  T  +   + +  +++ F S ++N+  FF       S G C+    L
Sbjct: 22  VITQLIYFLTSKKITN-LGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFL 80

Query: 522 F 524
           F
Sbjct: 81  F 81


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 125 KSF*KH---DGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKTKI 280
           KSF KH   D  L  ++ S+ ++    KP KN N +   HTL    + L++ +K+
Sbjct: 223 KSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 391 KLISSNSLQTLKTFFIHLLKTY 456
           KL+SSN+LQ +  F+  ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,208
Number of Sequences: 5004
Number of extensions: 54472
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)