Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o18r
         (704 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    41   4e-05
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    25   2.3  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   7.1  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.4  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 40.7 bits (91), Expect = 4e-05
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = -3

Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGANVD 556
           A++YNI SMPTF+F+K  + + +FSGAN +
Sbjct: 67  AAQYNIASMPTFLFIKRKEVVGQFSGANAE 96


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 89  IKKKNIVILVTYKSF*KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVK 268
           IKK + VI+  Y +    D + +  ++    II  +KP +NK      H +K L +  V+
Sbjct: 9   IKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIP-TKPLRNKIAGFVTHLMKRLRHSQVR 67

Query: 269 KTKIEIQ 289
              I++Q
Sbjct: 68  GISIKLQ 74


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 137 FKNFCK*QVSQCFFFLCYASRS 72
           F+ FC  +V+  FF  CYA  S
Sbjct: 69  FEGFCIAEVNGVFFCSCYAPPS 90


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 512 LVSIYLCLRIVVLSLSTLAPE 574
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 512 LVSIYLCLRIVVLSLSTLAPE 574
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,121
Number of Sequences: 2352
Number of extensions: 12658
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)