Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o18r
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61340.1 68418.m07697 expressed protein 42 5e-04
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 39 0.004
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 37 0.011
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 37 0.011
At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identica... 37 0.015
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 36 0.020
At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i... 34 0.080
At1g43560.1 68414.m05000 thioredoxin family protein contains Pfa... 34 0.080
At1g76760.1 68414.m08933 thioredoxin family protein similar to t... 33 0.14
At3g56420.1 68416.m06275 thioredoxin family protein similar to t... 33 0.18
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 33 0.24
At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38... 32 0.32
At2g40790.1 68415.m05032 thioredoxin family protein contains Pfa... 31 0.56
At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38... 31 0.56
At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1) i... 30 1.7
At4g04950.1 68417.m00719 thioredoxin family protein similar to P... 30 1.7
At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-... 29 2.3
At4g32580.1 68417.m04638 thioredoxin family protein contains Pfa... 29 4.0
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu... 28 5.2
At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, pu... 28 5.2
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu... 28 5.2
At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /... 28 5.2
At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /... 28 5.2
At3g53220.1 68416.m05864 thioredoxin family protein low similari... 27 9.2
At1g78740.1 68414.m09177 hypothetical protein 27 9.2
>At5g61340.1 68418.m07697 expressed protein
Length = 326
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +1
Query: 391 KLISSN-SLQTLKTFFIHLLKTYTC-FFFLIPS*FPSAAAYNFSLYLLVFKDSCFEFVDV 564
KL+S+N S + F++ LLKTY C FFFL+ SA A F+L+ L + + E
Sbjct: 108 KLLSNNHSADSSSVFYLRLLKTYVCNFFFLL-----SANASAFALFFLAY--NTLEAFGF 160
Query: 565 SAREFVQFLAI 597
S+R F FL++
Sbjct: 161 SSRNFYTFLSL 171
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGANVD 556
A E+N+ +MPTFV VK GK+++ GA D
Sbjct: 93 AKEFNVTAMPTFVLVKRGKEIERIIGAKKD 122
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGAN 562
A E+ + +MPTFVF+K G+ +D+ GAN
Sbjct: 75 AKEFGVEAMPTFVFIKAGEVVDKLVGAN 102
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGANVD 556
AS+ + +MPTF+F+K+G +D+ GAN D
Sbjct: 70 ASQLEVKAMPTFLFLKDGNAMDKLVGANPD 99
>At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identical
to SP|P29448 Thioredoxin H-type 1 (TRX-H-1) {Arabidopsis
thaliana}
Length = 114
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGANVD 556
AS++ I +MPTF+F+K GK LD+ GA D
Sbjct: 74 ASDWAIQAMPTFMFLKEGKILDKVVGAKKD 103
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/28 (46%), Positives = 24/28 (85%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGAN 562
A+ +NI+S+PTF F+++GK++D+ GA+
Sbjct: 338 AASWNISSVPTFCFIRDGKEVDKVVGAD 365
>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
{Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
for thioredoxin GI:992965
Length = 118
Score = 34.3 bits (75), Expect = 0.080
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGANVD 556
A E+ + +MPTFVF+K G +D GA D
Sbjct: 73 AQEFKVEAMPTFVFMKEGNIIDRVVGAAKD 102
>At1g43560.1 68414.m05000 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; similar to thioredoxin
GI:142153 from [Synechococcus PCC6301]
Length = 167
Score = 34.3 bits (75), Expect = 0.080
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGA 565
A++Y I ++PTF+ K+GK D F GA
Sbjct: 123 ANKYQIEALPTFILFKDGKLWDRFEGA 149
>At1g76760.1 68414.m08933 thioredoxin family protein similar to
thioredoxin CH2, M-type, chloroplast precursor GB:P23400
SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam
profile: PF00085 Thioredoxin
Length = 172
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGA 565
A++Y I ++PTF+ K+G+ D F GA
Sbjct: 128 ANKYKIEALPTFILFKDGEPCDRFEGA 154
>At3g56420.1 68416.m06275 thioredoxin family protein similar to
thioredoxin [Nicotiana tabacum] GI:20047; contains Pfam
profile: PF00085 Thioredoxin
Length = 100
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/27 (40%), Positives = 22/27 (81%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGA 565
++E+N+ + PT VF+K+G+++D+ GA
Sbjct: 54 SNEWNVEATPTVVFLKDGRQMDKLVGA 80
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGAN 562
+S ++I + PTF F+KNG+++ + GAN
Sbjct: 91 SSSWDIKATPTFFFLKNGQQIGKLVGAN 118
>At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 148
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 639 EYNINSMPTFVFVKNGKKLDEFSGANVD 556
E+N++++P VF+K G+++D G VD
Sbjct: 107 EFNLSTLPAIVFMKRGREVDMVVGVKVD 134
>At2g40790.1 68415.m05032 thioredoxin family protein contains Pfam
profile: PF00085 thioredoxin
Length = 154
Score = 31.5 bits (68), Expect = 0.56
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = -3
Query: 639 EYNINSMPTFVFVKNGKKLDEFSGAN 562
E+N+++ PT VF+K+G+++D+ G +
Sbjct: 110 EWNVDATPTVVFLKDGRQMDKLVGGD 135
>At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 129
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGANVD 556
A Y ++P FVFVK G+++D GA D
Sbjct: 89 AGTYRAITLPAFVFVKRGEEIDRVVGAKPD 118
>At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1)
identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3)
{Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA
for thioredoxin GI:992961
Length = 118
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGA 565
A E+ + +MPTF+F+K G+ + GA
Sbjct: 73 AEEFKVQAMPTFIFMKEGEIKETVVGA 99
>At4g04950.1 68417.m00719 thioredoxin family protein similar to
PKCq-interacting protein PICOT from [Mus musculus]
GI:6840949, [Rattus norvegicus] GI:6840951; contains
Pfam profile PF00085: Thioredoxin
Length = 488
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 636 YNINSMPTFVFVKNGKKLDEFSGAN 562
Y++ ++P FVF K+GK +D GA+
Sbjct: 70 YSVAAVPYFVFFKDGKTVDTLEGAD 94
>At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4)
nearly identical to SP|Q9SEU6 Thioredoxin M-type 4,
chloroplast precursor (TRX-M4) {Arabidopsis thaliana}
Length = 193
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 645 ASEYNINSMPTFVFVKNGKKLDEFSGA 565
A+ Y I S+PT + K G+K D GA
Sbjct: 151 ANRYGIRSVPTVIIFKGGEKKDSIIGA 177
>At4g32580.1 68417.m04638 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 160
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 636 YNINSMPTFVFVKNGKKLDEFSGAN 562
Y++ +P FVF K+GK +D GA+
Sbjct: 70 YSVALVPYFVFFKDGKTVDTLEGAD 94
>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 277
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 346 QQNQYFLHSRGCKHKKLISSNSLQTLKTFFI 438
Q NQ FL+ + KL+ NS T+ TF++
Sbjct: 60 QSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 90
>At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 346 QQNQYFLHSRGCKHKKLISSNSLQTLKTFFI 438
Q NQ FL+ + KL+ NS T+ TF++
Sbjct: 65 QSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 95
>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 346 QQNQYFLHSRGCKHKKLISSNSLQTLKTFFI 438
Q NQ FL+ + KL+ NS T+ TF++
Sbjct: 65 QSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 95
>At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 473 KKKKHVYVFNK*IKNVFNVCNEFEDINFLCLQPLECK 363
K K HV + + +KN++ N +N C + CK
Sbjct: 327 KGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCK 363
>At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 473 KKKKHVYVFNK*IKNVFNVCNEFEDINFLCLQPLECK 363
K K HV + + +KN++ N +N C + CK
Sbjct: 327 KGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCK 363
>At3g53220.1 68416.m05864 thioredoxin family protein low similarity
to SP|P29451 Thioredoxin [Rhesus macaque] {Macaca
mulatta}; contains Pfam profile: PF00085 Thioredoxin
Length = 126
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 633 NINSMPTFVFVKNGKKLDEFSGA 565
+I PTF F ++G+K+DE GA
Sbjct: 91 HIRYTPTFQFYRDGEKVDEMFGA 113
>At1g78740.1 68414.m09177 hypothetical protein
Length = 306
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 518 SIYLCLRIVVLSLSTLA-PENSSSFLPFLTKTNVG 619
+IY+C +V L LST+ P S LPFL +G
Sbjct: 94 TIYICESLVSLKLSTVTLPSVKSVSLPFLRVLKLG 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,494
Number of Sequences: 28952
Number of extensions: 251963
Number of successful extensions: 576
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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