Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o18f
         (483 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   2.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.9  

>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 80  LVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATW 196
           L  +++ + SI+++  + LKT+     DKL +  + + W
Sbjct: 104 LYQVFVFRRSIYLQIKERLKTQGISHLDKLQLGQYFSPW 142


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 88  NLSAQDVHSHQRFRRPEDKAGGSRRQARRDR 180
           N   ++ H  +   R   ++GG RRQ R  R
Sbjct: 565 NHMVKNSHYKEHIMRSITESGGRRRQTREKR 595


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 153  KQATSSS*STSWRPGA 200
            +  TS S +TSW PG+
Sbjct: 1347 QSTTSVSTTTSWNPGS 1362


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 370 FVQFLAILNEDERRHRVNVVLAGDVLALINV 278
           F+Q LAI+ E E   R  V L  D     N+
Sbjct: 328 FIQLLAIVPEKEESSRQAVNLICDKFERSNI 358


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 370 FVQFLAILNEDERRHRVNVVLAGDVLALINV 278
           F+Q LAI+ E E   R  V L  D     N+
Sbjct: 328 FIQLLAIVPEKEESSRQAVNLICDKFERSNI 358


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 96  CPRCPFTSK 122
           CP+CPF ++
Sbjct: 233 CPKCPFITE 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,062
Number of Sequences: 336
Number of extensions: 1756
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)