Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o16f
         (623 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           25   2.0  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   3.4  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   6.0  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   7.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   7.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   7.9  

>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 288 SRAPRTSSVIVSQLSSDLSSPKTPLSL 368
           S +  +SS + S  SS  SSP +PLSL
Sbjct: 112 SSSSSSSSSMSSSSSSSFSSPDSPLSL 138


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +2

Query: 152 ADYDSAVEKSKHLYEEKKS-----EVITNVVNKLIRNNKMNCMEYAYQLWLQGSK 301
           AD+        H+Y E+K      ++  N + K  R+N +  M+Y  + + +  K
Sbjct: 677 ADFCDVWINIAHIYVEQKQYISAIQMYENCLKKFYRHNNVEVMQYLARAYFRAGK 731


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +2

Query: 110 NDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWL 289
           +D  +EQ Y    + D  +   + +   +E K E  TNV +  I  ++    + +   W 
Sbjct: 565 DDESKEQTYGDPKIEDNPTESVEIEWSLDETKREAKTNVADDTISESEFYGWDCSDDGWP 624

Query: 290 QG 295
           QG
Sbjct: 625 QG 626


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 297 PRTSSVIVSQLSSDLSSPKTPLSLCTSA 380
           P    +IVS LS D ++  TPL++ + A
Sbjct: 116 PVKGQIIVSLLSRDSATGGTPLAIVSPA 143


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +1

Query: 202 EERSHHKCSEQTDT----KQQDELHGVRLSTLA 288
           EE+ H +C++Q++T    KQ ++      S LA
Sbjct: 484 EEKHHERCAKQSETTRIEKQLEQFESAPRSKLA 516


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 544 LVTLSVQDLEVDLVVLPQSNELPAD 470
           LV   +++L V    LPQ+NE  AD
Sbjct: 814 LVDAHLEELRVRFECLPQANESVAD 838


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,691
Number of Sequences: 2352
Number of extensions: 10952
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)