Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o15f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    36   4e-04
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    36   4e-04
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.58 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
 Frame = +1

Query: 238 PKYFAXXXXXXXXXXXXTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVRE 393
           P  FA            + T V P++ VK  LQV        + ++YK +++ F    +E
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 394 EGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASA 570
           +G     +G     I Y       F F + +K  + G +D  T +  R FV   AS  A
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF-LRYFVGNLASGGA 124


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
 Frame = +1

Query: 238 PKYFAXXXXXXXXXXXXTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVRE 393
           P  FA            + T V P++ VK  LQV        + ++YK +++ F    +E
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 394 EGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASA 570
           +G     +G     I Y       F F + +K  + G +D  T +  R FV   AS  A
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF-LRYFVGNLASGGA 124


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 326 HFTRSRGTTAVWVRPHDRTP 267
           HF  S G TA+W+ P +R+P
Sbjct: 58  HFIES-GITAIWLSPINRSP 76


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 571 PPTQTPPGTRRYGK 530
           PP QTPP  +  G+
Sbjct: 395 PPRQTPPSRKESGR 408


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 128 GPRNGEFRAASSNEEN 81
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,408
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)