Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o13r
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    42   7e-05
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    41   2e-04
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.88 
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.88 
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   3.5  

>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 712 IGENFE-NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGF 542
           IGE  +    E+ G V+N+R    ++A+WT     +   +EIG + K+ L +     I F
Sbjct: 139 IGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEF 198

Query: 541 QVHRDTMVKHSSATKNLYTV 482
             H D+    S+  K   +V
Sbjct: 199 SAHEDSSKSGSTRAKTRMSV 218


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -1

Query: 712 IGENFE-NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGF 542
           IGE  +    E+ G V N+R    +IA+WT +   +    +IG + KE LGI  K  I +
Sbjct: 164 IGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEY 223

Query: 541 QVHRDTMVKHSSATK 497
             H D+    S   K
Sbjct: 224 SAHEDSSKAGSMRAK 238


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +3

Query: 150  LPTSRVAYLTTYNYVTLHTDTRA*V*YKIRLLTFYSSRGLYHVTM*DKYDYKN*TNTTSV 329
            +P ++  +   Y Y+ L  D      +K  +  FY      H  M  + +Y+N T   S+
Sbjct: 1092 VPRNKTIFRILYEYIQLSDDHTLDDFWKTPVPIFYGEPDCIHNDMKGELNYENETEGFSI 1151

Query: 330  KYNFIL-LL*LRKFSLWDVLNIF 395
                IL LL +  + + DV  +F
Sbjct: 1152 NIREILDLLSILYYGIRDVHTLF 1174


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 563 DTRQDW-FPSTQRH-NG*A*FCDQESIHCLVLAL 468
           D  Q+W FP TQ++ N    FC+Q   H L+LAL
Sbjct: 98  DAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLAL 131


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 96  INMSVKHIIPVSSR*FHNLPTSRVAYLTTYNYVTLHTDTRA 218
           IN +++H IPV      N P+S   +LT      +   TRA
Sbjct: 271 INSAIQHPIPVLPPYAKNQPSSHSVFLTKKEQKKIRRQTRA 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,655
Number of Sequences: 5004
Number of extensions: 49306
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)