Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o13r
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 68 6e-12
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 68 6e-12
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 68 6e-12
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 49 4e-06
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 49 4e-06
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 49 4e-06
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 48 7e-06
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 45 6e-05
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 42 3e-04
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 42 3e-04
AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical ... 29 2.5
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 68.1 bits (159), Expect = 6e-12
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Frame = -1
Query: 715 LIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IG 545
++GE F E D ICGAVVNVR K DK+++WT DA + + IG+ LK++L I +
Sbjct: 135 IVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILR 194
Query: 544 FQVHRDTMVKHSSATK 497
++VH+D+ + SS K
Sbjct: 195 YEVHKDSSARTSSTVK 210
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 68.1 bits (159), Expect = 6e-12
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Frame = -1
Query: 715 LIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IG 545
++GE F E D ICGAVVNVR K DK+++WT DA + + IG+ LK++L I +
Sbjct: 134 IVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILR 193
Query: 544 FQVHRDTMVKHSSATK 497
++VH+D+ + SS K
Sbjct: 194 YEVHKDSSARTSSTVK 209
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 68.1 bits (159), Expect = 6e-12
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Frame = -1
Query: 715 LIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IG 545
++GE F E D ICGAVVNVR K DK+++WT DA + + IG+ LK++L I +
Sbjct: 132 IVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILR 191
Query: 544 FQVHRDTMVKHSSATK 497
++VH+D+ + SS K
Sbjct: 192 YEVHKDSSARTSSTVK 207
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Frame = -1
Query: 715 LIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHG 554
LIGE F ++ + ICG V NVR + KI++WT + + IG LKE+L H
Sbjct: 109 LIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHS 168
Query: 553 K-----IGFQVHRDTMVKHSSATKNLYTV 482
K I +Q HR+ + K +SA K +++
Sbjct: 169 KPLFDVIHYQTHRNCVKKTTSALKYKFSL 197
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Frame = -1
Query: 715 LIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHG 554
LIGE F ++ + ICG V NVR + KI++WT + + IG LKE+L H
Sbjct: 148 LIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHS 207
Query: 553 K-----IGFQVHRDTMVKHSSATKNLYTV 482
K I +Q HR+ + K +SA K +++
Sbjct: 208 KPLFDVIHYQTHRNCVKKTTSALKYKFSL 236
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Frame = -1
Query: 715 LIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL-----GIHG 554
LIGE F ++ + ICG V NVR + KI++WT + + IG LKE+L H
Sbjct: 109 LIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDDDTNMRIGVVLKEKLMAAASKAHS 168
Query: 553 K-----IGFQVHRDTMVKHSSATKNLYTV 482
K I +Q HR+ + K +SA K +++
Sbjct: 169 KPLFDVIHYQTHRNCVKKTTSALKYKFSL 197
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -1
Query: 715 LIGENF-ENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 566
L+GE F ++ + ICG V NVR K KI++WT D + IG LKE+L
Sbjct: 112 LVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKL 162
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -1
Query: 715 LIGENFENSDE-ICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQL 566
+IGE F + E +CG V NVR K KI++WT ++ A + IG LK+ L
Sbjct: 117 MIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVL 167
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = -1
Query: 715 LIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE--QLGIHGKIGF 542
+IGE F DE+CGAV ++R + D I++W +A T I + L+ QL + + +
Sbjct: 131 IIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEY 190
Query: 541 QVHRDTMVKHSS---ATKNL 491
+ H D + SS TKN+
Sbjct: 191 KRHDDCLRDQSSYRHTTKNI 210
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = -1
Query: 715 LIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKE--QLGIHGKIGF 542
+IGE F DE+CGAV ++R + D I++W +A T I + L+ QL + + +
Sbjct: 131 IIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEY 190
Query: 541 QVHRDTMVKHSS---ATKNL 491
+ H D + SS TKN+
Sbjct: 191 KRHDDCLRDQSSYRHTTKNI 210
>AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical
protein Y105E8A.5 protein.
Length = 576
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 460 KICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCRVSLAVLSVFS 588
KI N+ T CI +++ A PL + V+G + C + L F+
Sbjct: 180 KIANSATITCIAKLTKSTAEPLDILVIGTEHCEIFLIDSQAFT 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,234,588
Number of Sequences: 27780
Number of extensions: 270887
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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