Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o13f
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    26   0.28 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 24  TSEKACVYKEICIVILSRYGWKYYRRSRGVYYH*NEDQQ*RGGA 155
           T+ KAC  ++  +V +S+ G +Y RRS     H    +Q + GA
Sbjct: 56  TACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQQAGA 99


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 438 SKALFFLKTDKPSSSHLVSIVF 373
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 438 SKALFFLKTDKPSSSHLVSIVF 373
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 438 SKALFFLKTDKPSSSHLVSIVF 373
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 438 SKALFFLKTDKPSSSHLVSIVF 373
           S+  FF  + KP+ SH + + F
Sbjct: 151 SRMCFFKSSKKPAFSHFLIVFF 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,423
Number of Sequences: 336
Number of extensions: 3042
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)