Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o13f
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 111 6e-26
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 108 5e-25
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.6
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.8
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 4.8
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 6.3
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 8.3
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 111 bits (268), Expect = 6e-26
Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Frame = +1
Query: 142 NAEVPPEFLIKHPLQNQWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 318
NAE F+ HPLQ++W+LWF + W + L E+ +F TVE+FW ++ I S
Sbjct: 55 NAETA--FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASM 112
Query: 319 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE- 495
L DY+ F +GIRP WED N GG+W + + K + ++LD WL +VL IGE +
Sbjct: 113 LPAKSDYSYFLKGIRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDP 170
Query: 496 NSDEICGAVVNVRPKVDKIAIWT 564
E+ G V N+R +IA+WT
Sbjct: 171 TGKEVTGVVCNMRKGFYRIAVWT 193
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 108 bits (260), Expect = 5e-25
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Frame = +1
Query: 163 FLIKHPLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 339
F +KHPL W+LWF W E + TF++VE+FW ++++I S L DY
Sbjct: 34 FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDY 93
Query: 340 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICG 516
+ F++G+RP WED NK GG+W K + LD WL VL IGE + E+ G
Sbjct: 94 SFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMG 152
Query: 517 AVVNVRPKVDKIAIWT 564
V+N+R ++A+WT
Sbjct: 153 VVINMRKGFYRLAVWT 168
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.6
Identities = 27/99 (27%), Positives = 46/99 (46%)
Frame = -1
Query: 521 TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 342
T+P +S + S I +TSN N+ S F S + + +S+ I + LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856
Query: 341 A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 225
S W +S + +YN SSTV ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 163 FLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTF 264
F I+ L+ + FY N +NK W N +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 170 SSTRYKTSGVSGFTTMTETKHG 235
++T Y TSG GFTT T+ G
Sbjct: 647 TTTEYTTSGSVGFTTTLATQSG 668
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 358 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 468
+ +WE N G +L +EKK F +DR+W V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 162 FRGHLRVTVGLRFSGSRPLYFFCSISSHILRG*RCKFPYKHRPFPKLA 19
FRG+ + FS S P F + S IL+ +FP PF KLA
Sbjct: 173 FRGNSEAARDVVFSPSEPNEFVAAYDSGILQKWDIRFP--KLPFLKLA 218
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 404 HLPPILLASSSHIGRMPCLNT 342
H+PP LLA+SS R+P ++T
Sbjct: 140 HMPPNLLAASSARLRLPPIST 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,252
Number of Sequences: 5004
Number of extensions: 49609
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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