Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o13f
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 129 1e-30
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 124 5e-29
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 122 2e-28
02_04_0430 + 22834405-22834839 29 2.8
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 3.7
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 4.9
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 4.9
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 5.3
02_02_0106 + 6814391-6817007,6817086-6817462 28 6.5
05_04_0085 + 17790417-17790714,17791826-17791869,17793658-177937... 27 8.5
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 129 bits (312), Expect = 1e-30
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Frame = +1
Query: 175 HPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYA 342
HPL++ W+ WF DN + K TW ++ + TF TVEDFW LY++I PS+L G D+
Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFH 110
Query: 343 VFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAV 522
FK I P WED GG+W S + + D WL +L +IGE F+ DEICGAV
Sbjct: 111 CFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAV 166
Query: 523 VNVRPKVDKIAIWTADAMKQHA 588
V+VR K ++IAIWT +A + A
Sbjct: 167 VSVRGKQERIAIWTKNAANEAA 188
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 124 bits (299), Expect = 5e-29
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 3/139 (2%)
Frame = +1
Query: 175 HPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 345
H L QW+ W+ + K W +L + TFDTVE+FW LY I PS++ D+ +
Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHL 89
Query: 346 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 525
FK G+ P WED GG+W + +K T L+ WL+ ++ LIGE F+ S+EICG V
Sbjct: 90 FKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICGVVA 146
Query: 526 NVRPKVDKIAIWTADAMKQ 582
+VR + DK+A+WT A +
Sbjct: 147 SVRQRGDKLALWTRTASNE 165
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 122 bits (295), Expect = 2e-28
Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Frame = +1
Query: 175 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 345
HPL+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+ P L D +
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHL 108
Query: 346 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 525
FK+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++CG V+
Sbjct: 109 FKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVL 164
Query: 526 NVRPKVDKIAIWTADAMKQHA 588
+VR D +++W +A A
Sbjct: 165 SVRFNEDILSVWNRNASDHQA 185
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 422 FSRLISHLPPILLASSSHIGRM 357
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>09_02_0423 +
9153088-9153181,9153281-9153378,9153532-9153708,
9153827-9153927,9154334-9154490
Length = 208
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 145 AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 240
AEV PE ++ HP +Q + Y D N +W E
Sbjct: 2 AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 296 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 439
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 319 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 462
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 23.8 bits (49), Expect(2) = 5.3
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +2
Query: 290 CTIILSYRQNFAKVMTMQYSSKAFVLC 370
CT++ +R++ +++T+Q+S C
Sbjct: 290 CTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 5.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 356 AFVLCGKTMLTRWEEDGLSVLRKN 427
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 509 ISSEFSKFSPIKRRTTSNQNLSKSVKR--CFFSRLISHLPPILLASSSHIGRMP 354
+ SE K SP+ SN NLS + CF +L S I++ ++S G++P
Sbjct: 354 LPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYS----IVVFNNSFSGKLP 403
>05_04_0085 +
17790417-17790714,17791826-17791869,17793658-17793793,
17794315-17794391,17794646-17794706,17794707-17794924,
17795168-17795412,17796032-17796401,17796916-17797344
Length = 625
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +1
Query: 397 GRWLISLEKKQRFTDLDRFWLDVVLLLIGE------NFENS-DEICGAVVNVRPKVDKIA 555
G W + + +R ++DR ++L +IG N ENS D++ G +V K ++
Sbjct: 358 GYWYLPTKNNRRMREIDREVRKILLEIIGNKERAITNGENSNDDMLGLLVESNTKQPELR 417
Query: 556 IWTADAMKQ 582
+ T D +++
Sbjct: 418 MSTDDIIEE 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,993,080
Number of Sequences: 37544
Number of extensions: 314907
Number of successful extensions: 727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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