Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o13f
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 188 3e-48
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 184 4e-47
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 183 7e-47
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 138 4e-33
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 136 8e-33
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 131 4e-31
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 131 4e-31
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 131 4e-31
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 92 3e-19
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 92 3e-19
AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical... 29 3.3
Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 5.8
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 27 7.6
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 27 7.6
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 27 7.6
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 188 bits (457), Expect = 3e-48
Identities = 80/148 (54%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Frame = +1
Query: 139 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 318
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 319 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-E 495
L G DY +FK+GI+PMWED N GGRWL+ ++K++R LD +WL++++ ++GE F E
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDE 139
Query: 496 NSDEICGAVVNVRPKVDKIAIWTADAMK 579
D ICGAVVNVR K DK+++WT DA +
Sbjct: 140 YGDYICGAVVNVRQKGDKVSLWTRDATR 167
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 184 bits (448), Expect = 4e-47
Identities = 82/150 (54%), Positives = 110/150 (73%), Gaps = 3/150 (2%)
Frame = +1
Query: 139 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 318
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 319 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK-QRFTD-LDRFWLDVVLLLIGENF 492
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE F
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYWLELLMAIVGEQF 139
Query: 493 -ENSDEICGAVVNVRPKVDKIAIWTADAMK 579
E D ICGAVVNVR K DK+++WT DA +
Sbjct: 140 DEYGDYICGAVVNVRQKGDKVSLWTRDATR 169
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 183 bits (446), Expect = 7e-47
Identities = 82/151 (54%), Positives = 110/151 (72%), Gaps = 4/151 (2%)
Frame = +1
Query: 139 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 318
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGG 79
Query: 319 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK--QRFTD-LDRFWLDVVLLLIGEN 489
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGEQ 139
Query: 490 F-ENSDEICGAVVNVRPKVDKIAIWTADAMK 579
F E D ICGAVVNVR K DK+++WT DA +
Sbjct: 140 FDEYGDYICGAVVNVRQKGDKVSLWTRDATR 170
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 138 bits (333), Expect = 4e-33
Identities = 59/133 (44%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Frame = +1
Query: 175 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 354
+PL+ W+ W+ +++RNK+WE+ L ++ TF+TV +FW LY I+ PS L DY VF+
Sbjct: 12 YPLKRNWTWWYLNDERNKSWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRD 71
Query: 355 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 531
I+PMWE N GGRWLI ++K + +D WL++++ L+GE F ++ + ICG V NV
Sbjct: 72 DIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNV 131
Query: 532 RPKVDKIAIWTAD 570
R K KI++WT D
Sbjct: 132 RGKGSKISVWTKD 144
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 136 bits (330), Expect = 8e-33
Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Frame = +1
Query: 169 IKHP---LQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 339
I HP L+ W+ W+ +++RNK+WEE L + TF +V +FW L+ IK PS L DY
Sbjct: 12 ISHPVYKLKRNWTWWYLNDERNKSWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDY 71
Query: 340 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICG 516
VF+ GI PMWE N+ GGRWLI++EK + +D W ++++ +IGE F ++ + +CG
Sbjct: 72 NVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCG 131
Query: 517 AVVNVRPKVDKIAIWTADA 573
V NVR K KI++WT ++
Sbjct: 132 IVCNVRGKGSKISVWTTNS 150
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 131 bits (316), Expect = 4e-31
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +1
Query: 175 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 354
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 355 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 531
I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NV
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 532 RPKVDKIAIWT 564
R + KI++WT
Sbjct: 129 RGQGSKISVWT 139
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 131 bits (316), Expect = 4e-31
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +1
Query: 175 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 354
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 48 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 107
Query: 355 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 531
I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NV
Sbjct: 108 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 167
Query: 532 RPKVDKIAIWT 564
R + KI++WT
Sbjct: 168 RGQGSKISVWT 178
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 131 bits (316), Expect = 4e-31
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +1
Query: 175 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQ 354
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 355 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 531
I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NV
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 532 RPKVDKIAIWT 564
R + KI++WT
Sbjct: 129 RGQGSKISVWT 139
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 91.9 bits (218), Expect = 3e-19
Identities = 41/102 (40%), Positives = 63/102 (61%)
Frame = +1
Query: 268 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 447
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 448 RFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADA 573
R W ++++ +IGE F DE+CGAV ++R + D I++W +A
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNA 163
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 91.9 bits (218), Expect = 3e-19
Identities = 41/102 (40%), Positives = 63/102 (61%)
Frame = +1
Query: 268 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 447
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 448 RFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADA 573
R W ++++ +IGE F DE+CGAV ++R + D I++W +A
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNA 163
>AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical
protein C17H12.8 protein.
Length = 348
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 533 LTLTTAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIG 363
LT T S++F F TT Q ++KSV R++ H +L + +H+G
Sbjct: 84 LTRTIVSSRSAKFVHFYIFPNTTTKFQVITKSVNMHSSFRIVVHFERMLNTTVTHLG 140
>Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical
protein W01A8.7 protein.
Length = 266
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 322 RQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVV 468
+ GH Y K+ + WE + N G+W+ K++ +D+FW++V+
Sbjct: 227 KAGH-YQHLKKILYKKWESENN---GKWI-----KRKSNQVDKFWIEVI 266
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -1
Query: 512 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSH 369
++ E K +KR + K C F + +S +L++SS H
Sbjct: 1345 RLEVEVKKNKGVKRSVVKKELTFADYKNCLFDKTVSRKQQMLISSSKH 1392
>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
protein F43G9.6 protein.
Length = 2034
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 190 QWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHD-YAVFKQGIRP 366
QW +R + L F + + H++ P+++R+ + Y V +G+
Sbjct: 693 QWPTLVDQRNRKREHVAVLHAKMWFGRTDQLTKWKEHVQ-PADIRRFMEMYEVQTKGLAL 751
Query: 367 MWEDDANKMGGRW 405
W+D+A+ G+W
Sbjct: 752 KWKDEADIYDGKW 764
>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
Length = 2034
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 190 QWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHD-YAVFKQGIRP 366
QW +R + L F + + H++ P+++R+ + Y V +G+
Sbjct: 693 QWPTLVDQRNRKREHVAVLHAKMWFGRTDQLTKWKEHVQ-PADIRRFMEMYEVQTKGLAL 751
Query: 367 MWEDDANKMGGRW 405
W+D+A+ G+W
Sbjct: 752 KWKDEADIYDGKW 764
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 512 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMP 354
Q S S S + ++T + SKS +RC+F L L+ SSS R P
Sbjct: 4 QASQRSSSTSAVAQKTRERRK-SKSRRRCWFGCLWLSSRVSLIRSSSRFSRSP 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,616
Number of Sequences: 27780
Number of extensions: 276486
Number of successful extensions: 681
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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