Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o12r
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   8e-40
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)            31   0.36 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.1  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   4.4  
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  159 bits (387), Expect = 8e-40
 Identities = 75/91 (82%), Positives = 84/91 (92%), Gaps = 2/91 (2%)
 Frame = -3

Query: 267 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 94
           + VR+  KV  CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 93  HKRVIDLHSPSEIVKQITSINIEPGVEVEVT 1
           HKR+IDLHSPSEIVKQITSI+IEPGVEVEVT
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVT 96


>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
          Length = 584

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 262 CALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 149
           C  A  GLC P  +   ++ +  GPSP +  DP+   P
Sbjct: 414 CLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 333 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 232
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 193  GPSPHANQDPAYHHP 149
            GP PH+ Q P  HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -2

Query: 298 YPPHQDHSYFTQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 149
           Y P   +SY   CA  +   +G        +   A+ +   PH N DPA+  P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319


>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 183 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 55
           R+PT    + T +K PC     TW R +    KR + +H P+ +
Sbjct: 22  RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 366 TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 244
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
 Frame = -3

Query: 339 SGKDIEKPQAEVSPIHRIRITLTSR-NVRSLEKVCADLINGAKKQKLRVKGPVRMPTKIL 163
           S +  +K   +VSP+ RI+   TSR ++ S      DL +   K K   K P+  P    
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183

Query: 162 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 31
                  P    + + D  ++R HKR+ D +S      ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,897
Number of Sequences: 59808
Number of extensions: 336906
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)