Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o12r
(464 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 173 4e-44
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 28 3.8
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 27 6.6
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 27 6.6
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 27 6.6
U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein. 27 6.6
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 6.6
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 6.6
AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical ... 27 8.8
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 173 bits (422), Expect = 4e-44
Identities = 76/98 (77%), Positives = 93/98 (94%)
Frame = -3
Query: 294 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 115
HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 114 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVT 1
DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT
Sbjct: 77 DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVT 114
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 252 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 130
+E V A + G KK+ + K + PTK +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 321 KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 211
+ +A+ SP HRI +TS+N C+ L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 363 LLNSGRDKQLFNQKLFSAEPEKPHVSVTFEREK 461
++++G+D Q+ + L +PEKP SV ++K
Sbjct: 6560 VISAGKDAQMSEKSLTPEDPEKPTDSVQEHQQK 6592
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 254 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 349
ERTL E R ++MR + + S G S+SLP A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 363 LLNSGRDKQLFNQKLFSAEPEKPHVSVTFEREK 461
++++G+D Q+ + L +PEKP SV ++K
Sbjct: 6560 VISAGKDAQMSEKSLTPEDPEKPTDSVQEHQQK 6592
>U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein.
Length = 869
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 363 LLNSGRDKQLFNQKLFSAEPEKPHVSVTFEREK 461
++++G+D Q+ + L +PEKP SV ++K
Sbjct: 435 VISAGKDAQMSEKSLTPEDPEKPTDSVQEHQQK 467
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 357 MAAAVVSGKDIEKPQAEVSPIH 292
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 357 MAAAVVSGKDIEKPQAEVSPIH 292
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical
protein H12I13.1 protein.
Length = 592
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 267 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 142
R+ +S KVC L GAKK++ + KIL IT KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,056,671
Number of Sequences: 27780
Number of extensions: 239725
Number of successful extensions: 518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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