Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o10r
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   128   1e-30
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   2.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   3.7  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   6.5  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  128 bits (308), Expect = 1e-30
 Identities = 61/108 (56%), Positives = 75/108 (69%), Gaps = 7/108 (6%)
 Frame = -1

Query: 701 FTKNPQLTXLLXDPFFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRSGVLP 522
           F ++P L  +L  PFF+  +  AQ+  R VVAQAA++G+P PA S  L+FYDGYRS VLP
Sbjct: 382 FREDPNLESILFHPFFTNGVEKAQAGWRRVVAQAAMLGIPVPATSTGLSFYDGYRSAVLP 441

Query: 521 ANLLQAQRDYFGAHTYELLHNPG-------QFIHTNWTGHGGKISAST 399
           ANLLQAQRDYFGAHT+ +L           + IH NWTGHGG ISA+T
Sbjct: 442 ANLLQAQRDYFGAHTFRVLPEAADKSLPADKDIHINWTGHGGNISATT 489


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 497 DYFGAHTYELLHNPGQFIHTNW 432
           D F +HTY+ +++ G+F +  W
Sbjct: 199 DGFSSHTYKFVNDKGEFYYCKW 220


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/52 (26%), Positives = 32/52 (61%)
 Frame = +2

Query: 116 DILRNVLSIDNNLTKKIENN*LLTETIRSISHSSFHYFVRCVKIWSRTPKRA 271
           ++L ++L+ID ++   + ++ +L E I+S+SH    + ++ +K W R   +A
Sbjct: 364 EMLSSLLAIDFDVL--LPHSKILWECIKSVSHQDDIHALKFLKRWVRASAKA 413


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  SIEAR*IECRSPKLKEC*YTSECT 135
           S + R I C +P + +C Y SECT
Sbjct: 53  SSQDRCIICGAPGVSDCYYCSECT 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,334
Number of Sequences: 5004
Number of extensions: 49978
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)