Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o10r
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        68   7e-12
SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11)                    28   6.9  
SB_50822| Best HMM Match : 6PGD (HMM E-Value=3.7e-22)                  28   9.1  

>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 36/81 (44%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
 Frame = -1

Query: 701 FTKNPQLTXLLXDPFFSERISSAQSSLRTVVAQAALVGVPAPALSAALAFYDGYRSGV-- 528
           F KNP L  LL D FF + I   Q S R  +A A  +G+P PA S ALAFYDGYR     
Sbjct: 338 FNKNPNLDNLLLDDFFKDAIHKCQDSWRKTIATAVTLGIPTPAFSTALAFYDGYRLSATI 397

Query: 527 ---LPANLLQAQ--RDYFGAH 480
              +P N  Q Q  R+ + +H
Sbjct: 398 LVPIPTNCSQTQYFREQWNSH 418


>SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11)
          Length = 314

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = -3

Query: 546 RIQIWS-----SAR*SIAGTKGLFRGPHIRASAQSRSVHSHELDRAWRENFRID 400
           + QIW      SA+ SI GT   +    +  + +  S   HEL+  W E F +D
Sbjct: 59  KTQIWMGTSKWSAKISITGTSDPYVTVQVGKTKKRTSTIPHELNPEWNETFLLD 112


>SB_50822| Best HMM Match : 6PGD (HMM E-Value=3.7e-22)
          Length = 122

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 701 FTKNPQLTXLLXDPFFSERISSAQ 630
           F KNP L  LL D FF + I   Q
Sbjct: 99  FNKNPNLDNLLLDDFFKDAIHKCQ 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,993,687
Number of Sequences: 59808
Number of extensions: 370267
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)