Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o10r
         (740 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    26   1.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   5.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   5.7  

>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 521 ANLLQAQRDYFGAHTYELLHNPGQFIHTNW 432
           A  L  + DY   +  EL + P QF+H  W
Sbjct: 441 ARRLDPKGDYVKRYLPELANYPAQFVHEPW 470


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 382 NIIMINIIYCNFVLGETLKTIFEFYFCS 299
           N++++N+ +C   +  +  +I +  FCS
Sbjct: 148 NLVLVNVGFCPTFVRNSRTSIIDLTFCS 175


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = -1

Query: 155  LNCYQWKVHSEVYQHSLSLGDRHSIYRASIESFCFIGTRNINNCENV 15
            +  +Q + H EV  H   +   H  +R  +    F  + +  NC  V
Sbjct: 920  IGAWQSRKHGEVNFHLSQIISGHGFFRKYLADMKFTSSPDCPNCPGV 966



 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 89   ADHLSLRNADILR 127
            AD+  LRNAD+LR
Sbjct: 1039 ADNAQLRNADVLR 1051


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,959
Number of Sequences: 2352
Number of extensions: 12872
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)