Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o10f
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.5  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.5  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 450 SVCLSIVNYHHQL*YH 403
           S+ + +V+YHHQL  H
Sbjct: 127 SLVIKLVDYHHQLLGH 142


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 486 KVFLSLTTLYTISVCLSIVNYHHQL*YHL 400
           KV +      T   C  I  Y H L YHL
Sbjct: 222 KVHIREDKRLTCPKCPFITEYKHHLEYHL 250


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 357 AVDEFVKKLIPLLSKGDIIID 419
           A+DE   KL PL  + D+I D
Sbjct: 64  AIDEETYKLTPLNEQFDVIKD 84


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 25  SWLKTFTVLHKNNSNC 72
           SW+   TV ++N +NC
Sbjct: 112 SWIFLETVANENTTNC 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,256
Number of Sequences: 336
Number of extensions: 3394
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)