Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o10f
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 253 1e-68
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.25
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.33
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.33
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 28 1.00
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 1.7
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 27 3.0
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 4.0
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 4.0
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 5.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.3
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 7.0
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 9.3
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 25 9.3
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 253 bits (620), Expect = 1e-68
Identities = 120/178 (67%), Positives = 141/178 (79%), Gaps = 2/178 (1%)
Frame = +3
Query: 114 MPQNE-ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATS 290
M Q E AD LIGLAVMGQNLILN DKG+ VC +NRT S+V+EFL NEAKG ++GA S
Sbjct: 1 MSQKEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSIVGAHS 60
Query: 291 LDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELS 470
L++ VSKLK+PR +LLVKAG VD ++ L PLL KGDII+DGGNS Y DT + C+EL+
Sbjct: 61 LEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA 120
Query: 471 GTGILYVGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKA-XDEPCCDWVG 641
GIL+VG GVSGGE+GARYGPSLMPGG+PAAWP IK IFQ + AKA +EPCCDWVG
Sbjct: 121 KKGILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVG 178
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 177 LNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVSKLKRPRKIVLLVKAG 353
+N N+ + N VSKV E ++ E +++G T+++D + + P I LL AG
Sbjct: 841 VNFNEANSAIHERNEKVSKVSEMIEQE---LELLGGTAIEDKLQE-NVPETIALLAIAG 895
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 123 NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 233
N + L+ + + Q+++L +N+KG +VC+ N T K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 123 NEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSK 233
N + L+ + + Q+++L +N+KG +VC+ N T K
Sbjct: 1241 NMVTLVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 28.3 bits (60), Expect = 1.00
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -1
Query: 463 SLHHFCVSKYCELPPSIIISPLLKSGISFFTNSSTANPAFTKRTIF-LGLFSLDTMSSKE 287
SL+ Y P+ IS + SG+S++ NSS A F L + +L ++K
Sbjct: 132 SLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSSIIMNAVEYNQFFPLTITTLIVKNNKN 191
Query: 286 VAPITFVPL-ASFFRNSSTFDTVLLN 212
V ++ +P SF+ +S +TVLLN
Sbjct: 192 V--VSNLPKNVSFYFHSD--NTVLLN 213
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 143 ECNISFILRHFFKLDFKSLSNY 78
+C I FI H++ +DF +L +Y
Sbjct: 422 DCKIDFIACHWYGIDFSNLQDY 443
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 382 SFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVA 281
S FT SS+ N A + FLG S + + S+EVA
Sbjct: 210 SLFTVSSSINRATSGALNFLGTASAEPLPSEEVA 243
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 143 ECNISFILRHFFKLDFKSLSNYFKQ 69
ECN + ++ F K DF + ++F+Q
Sbjct: 266 ECNFNHNIKEFSKCDFTQMFHHFEQ 290
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 290 GGSPNHFCTLSFIF*KFLYL*HCSIKRADNITLVIH 183
G S +HFC +F+ L H S NIT IH
Sbjct: 896 GVSISHFCISNFLILFITALEHASAILCKNITYTIH 931
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 424 PPSIIISPLLKSGISFFTNSSTANPAFTKRT 332
PPS PL S S TNSS A+ +RT
Sbjct: 325 PPSSATGPLYHSPQSSLTNSSVASADVQERT 355
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 123 NEADIAL-IGLAVMGQNLILNMNDK 194
N D+ L IGL MG LILNM D+
Sbjct: 402 NMHDLTLSIGLQTMGARLILNMVDR 426
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 161 HNSQTYECNISFILRHFFKLDFKSLSNYFKQ 69
H+S TY ++ I R F + KS+S F Q
Sbjct: 488 HSSGTYRLRVTTISRSFITGNAKSISESFDQ 518
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 276 IGATSLDDMVSKLKRPRKIVLLVKAGFAVD 365
+G + L D++ +KRP K+ LV A+D
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAID 30
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 617 IXSFSAYGLENF-FYMRPCSRMPTRHQRWSISCT 519
I S + Y L+N YMRP + + + W + CT
Sbjct: 199 ILSNALYALDNVQTYMRPIFQGIDKRRGWKLDCT 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,125
Number of Sequences: 5004
Number of extensions: 53133
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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