Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o10f
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 143 3e-56
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 28 5.6
SB_7213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15) 27 9.8
SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_49089| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06) 27 9.8
SB_28162| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 143 bits (346), Expect(2) = 3e-56
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +3
Query: 384 IPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGPSLMPGGHPA 563
+PLL GDIIIDGGNS+Y D+ + CK L G+L+VG GVSGGE+GARYGPSLMPGG
Sbjct: 135 VPLLESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGPSLMPGGSEK 194
Query: 564 AWPHIKEIFQAICAKAXDEPCCDWVG 641
AWPHIK IFQAI AKA ++PCCDWVG
Sbjct: 195 AWPHIKPIFQAIAAKAGNDPCCDWVG 220
Score = 93.5 bits (222), Expect(2) = 3e-56
Identities = 50/86 (58%), Positives = 62/86 (72%)
Frame = +3
Query: 129 ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVS 308
ADIALIGLAVM VCA NRTV KV+ FL NEAKGT+++GA SL +MVS
Sbjct: 31 ADIALIGLAVM--------------VCAHNRTVEKVDRFLANEAKGTRIVGAHSLQEMVS 76
Query: 309 KLKRPRKIVLLVKAGFAVDEFVKKLI 386
KLK+PR++++LVKAG AVD F+ L+
Sbjct: 77 KLKKPRRVMILVKAGSAVDAFIDHLV 102
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 485 LCWNGCKWR*RWCTI-WTIFDAWWASCCMAAY 577
LC GC W I WTI D W+ CCM +
Sbjct: 627 LCLTGCAVLESWAGIHWTIPDGTWSGCCMVPF 658
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 459 KELSGTGILYVGMGVSGGEDGARYGPSLMPGG 554
+ L G G YVG+ +S +G+R GP + P G
Sbjct: 711 ENLEGRGGDYVGISLSTSTEGSRGGPHVDPKG 742
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -1
Query: 436 YCELPPSIIISPLLKSGISFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVAPITFVPLA 257
Y +PP KS I STAN +K TI + ++DT S++E++ L
Sbjct: 115 YPTMPPDEEPKDKHKSDIHKALEHSTANKQ-SKMTILIDYVNIDTRSTREISTKRLHQLN 173
Query: 256 SFFRNSST 233
RN+ T
Sbjct: 174 QQVRNTFT 181
>SB_7213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 477 GILYVGMGVSGGEDGARYGPSLMPGGHPAAWPHI 578
G++ V M SG G+ Y P + P G+P H+
Sbjct: 25 GVIEVKMSASGFVSGSFYTPDVSPYGYPIHTNHL 58
>SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)
Length = 783
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 162 GQNLILNMNDKGYVVCAFNRTVSKVEEFLKNE 257
G+ + MND G CA N TV++ EE ++E
Sbjct: 398 GEYCCVAMNDAGRTTCAGNLTVAEEEEESESE 429
>SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 441 LSIVNYHHQL*YHLCLKVVLAFSQTRQQQIQLL 343
LS +N H + LCL+++ F +T+Q Q+++L
Sbjct: 184 LSTLNGHQKALNILCLRLLWNFIETKQDQLRVL 216
>SB_49089| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
Length = 250
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 536 WSISCTIFTSTYTHSNIKYSCP*QLFTPF--LCV*VL*ITTINY 411
WS +CTI ++Y I +S P + P LC+ VL I I+Y
Sbjct: 76 WSAACTISLASYFSLAIFHSQPMSTYIPMTSLCIAVL-IMVISY 118
>SB_28162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 234 VEEFLKNEAKGTKVIGATSLDDMVSKLKRP---RKIVLLVKAGFAVDEFVKKLI 386
VE +K + K V A + D+ +L RP +V V GFAVD+FVK +
Sbjct: 31 VEIAVKEQKKKPSVDAALPVVDLQKEL-RPISLTPVVSKVAEGFAVDDFVKPAV 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,217,009
Number of Sequences: 59808
Number of extensions: 372174
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -