Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   2.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   5.0  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   6.6  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   6.6  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   8.8  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 687 GTSPEFLPHFTSKSCRLVNFMTIYFLLI*FSYIKYTKK--YVIIFML 553
           GTSP F  +F       +N  T+ FLLI F YIK  +   YV +F +
Sbjct: 247 GTSP-FYYYFVRLPWLFLNPTTLLFLLISFVYIKPARLLIYVPLFFI 292


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 562 YNDIFLCILDIRKLDQEKVYCHEI 633
           YN + LC++ +++L  EK +C  +
Sbjct: 392 YNHLKLCVILLKRLTAEKYFCKRL 415


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 192 QKY-FHFIKENFSYRSLYLFVRRMEFSKL 275
           QKY ++ +KE FSY    +  R+ +FSKL
Sbjct: 330 QKYLYNLMKERFSYFEKIIKSRQEDFSKL 358


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/68 (26%), Positives = 26/68 (38%)
 Frame = -1

Query: 438 QKSGYCTLLYLVIGNLDQASDDQSLCHEP*GNLIFNDKRLHDDDRFLNYVYTL*VIWRIP 259
           Q   + + L LV       S   +LC  P   L          D FLN VY+    +R+ 
Sbjct: 102 QTLSFSSALKLVQARAKAMSYASALCQNPTSMLAITLTSRFPTDNFLNTVYSAVQKYRLI 161

Query: 258 FFGQINTD 235
               +N+D
Sbjct: 162 DIANVNSD 169


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 279 IMYIHNLGICHRHVDVCR*K*DSLKVRDTMTGRLKL 386
           + Y+H+ G+CHR +     K  +L V D  TG LKL
Sbjct: 138 LAYLHSTGVCHRDI-----KPQNLLV-DYKTGILKL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,493
Number of Sequences: 5004
Number of extensions: 70213
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)