Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09r
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    33   0.29 
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    33   0.29 
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    33   0.29 
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    31   0.66 
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      29   4.7  
AL117207-15|CAB60407.2|  476|Caenorhabditis elegans Hypothetical...    28   8.2  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    28   8.2  
AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.     28   8.2  
AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1 prot...    28   8.2  

>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 706  PYVYTTRYQPRV--LTPFYIKIMSFSKFHDNILSLDLIFLYQVYKEICHYIYVST 548
            P+   TRY+  V    P    +MSFS F  +  + D +F YQ+ +E   Y YV+T
Sbjct: 1659 PFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEE-SDYFYVTT 1712


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 706  PYVYTTRYQPRV--LTPFYIKIMSFSKFHDNILSLDLIFLYQVYKEICHYIYVST 548
            P+   TRY+  V    P    +MSFS F  +  + D +F YQ+ +E   Y YV+T
Sbjct: 1659 PFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEE-SDYFYVTT 1712


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 706  PYVYTTRYQPRV--LTPFYIKIMSFSKFHDNILSLDLIFLYQVYKEICHYIYVST 548
            P+   TRY+  V    P    +MSFS F  +  + D +F YQ+ +E   Y YV+T
Sbjct: 1659 PFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEE-SDYFYVTT 1712


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 706  PYVYTTRYQPRV--LTPFYIKIMSFSKFHDNILSLDLIFLYQVYKEICHYIYVST 548
            P+   TRY+  V    P    +MSFS F  +  + D +F YQ+ +E   Y YV+T
Sbjct: 1659 PFFEKTRYEGSVEETAPIGAAVMSFSAFDADEEAKDNVFTYQLSEE-SDYFYVTT 1712


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  FFNDSIENRGRLYM*FYKKMFDNNHY 162
           F   + ++RGR Y  FY+ +F N HY
Sbjct: 509 FMKGACDHRGRYYQDFYRLLFQNEHY 534


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  FFNDSIENRGRLYM*FYKKMFDNNHY 162
           F   + ++RGR Y  FY+ +F N HY
Sbjct: 509 FMKGACDHRGRYYQDFYRLLFQNEHY 534


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 430 RILYLIIPCNWKSGPSFRRPVIVSRTL 350
           R  Y  IPCNW SG S+ + +I+S  L
Sbjct: 118 RNFYKRIPCNWSSGYSWTKTMILSVVL 144


>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 204 HFIKENFSYRSLYLFVRRMEFSKLLIMYIHNLGICHRHV 320
           H+ K+      +Y+ +   +  + L  YIH++GICHR +
Sbjct: 125 HYSKQRQQIPMIYVKLYMYQLLRSLA-YIHSIGICHRDI 162


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 204 HFIKENFSYRSLYLFVRRMEFSKLLIMYIHNLGICHRHV 320
           H+ K+      +Y+ +   +  + L  YIH++GICHR +
Sbjct: 125 HYSKQRQQIPMIYVKLYMYQLLRSLA-YIHSIGICHRDI 162


>AL117207-15|CAB60407.2|  476|Caenorhabditis elegans Hypothetical
           protein Y60A3A.12 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 279 IMYIHNLGICHRHV 320
           I+Y+H++GICHR +
Sbjct: 289 ILYLHSVGICHRDI 302


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 432 IFVYSTVMISENGSIYQNYQIIKYYFVIITTLY 530
           IF+Y  ++ SE  S + NY+ +  YF I   LY
Sbjct: 24  IFIY--LIFSEKSSKFGNYRYLLLYFAIFNLLY 54


>AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 279 IMYIHNLGICHRHV 320
           I+Y+H++GICHR +
Sbjct: 263 ILYLHSVGICHRDI 276


>AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1
           protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 279 IMYIHNLGICHRHV 320
           I+Y+H++GICHR +
Sbjct: 289 ILYLHSVGICHRDI 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,262,878
Number of Sequences: 27780
Number of extensions: 373373
Number of successful extensions: 819
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)