Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09r
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 362 HNDWSSEAWSRFPITR--YNKVQYPDFCLFNGYD 457
           H  W++  ++   + R  YN+V  PD  L+N  D
Sbjct: 66  HLKWNASEFAGIRVIRVPYNRVWRPDTILYNNAD 99


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 76  NNTFFNDSIENRGRLYM*FYKKMFDNNHYL*QI 174
           NN  +N++  N  +LY   YKK++ N +Y+ QI
Sbjct: 87  NNYNYNNN--NYKKLYCNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 76  NNTFFNDSIENRGRLYM*FYKKMFDNNHYL*QI 174
           NN  +N++  N  +LY   YKK++ N +Y+ QI
Sbjct: 87  NNYNYNNN--NYKKLYCNNYKKLYYNINYIEQI 117


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 76  NNTFFNDSIENRGRLYM*FYKKMFDNNHYL*QI 174
           NN  +N++  N  +LY   Y+K++ N +Y+ QI
Sbjct: 87  NNYNYNNN--NYKKLYCNNYRKLYYNINYIEQI 117


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 392 RFPITRYNKVQYPDFCLFNGY 454
           RF +       YP+FC F  Y
Sbjct: 605 RFAVFALGSSAYPNFCAFGRY 625


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 420 YNILIFVYSTVMISENGSIYQNYQIIKYY-FVIITT 524
           YN L+ + STV   +   I +N+   K+  F + TT
Sbjct: 680 YNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT 715


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 420 YNILIFVYSTVMISENGSIYQNYQIIKYY-FVIITT 524
           YN L+ + STV   +   I +N+   K+  F + TT
Sbjct: 770 YNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT 805


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,856
Number of Sequences: 438
Number of extensions: 5428
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)