Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09r
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    30   1.4  
At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase...    29   3.3  
At4g30540.1 68417.m04335 glutamine amidotransferase class-I doma...    28   7.7  

>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 393 DFQLQGIIRYNILIFVYSTVMISENGSIYQNYQIIKYYFVIIT 521
           DF +QG+   ++ +  Y       +  +Y+N++I K+ FV +T
Sbjct: 334 DFSVQGVTSISVDVHKYGLAPKGTSTVLYRNHEIRKHQFVAVT 376


>At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase
           large subunit 3 (APL3) / ADP-glucose pyrophosphorylase
           identical to SP|P55231
          Length = 521

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 708 FPMSIPLGTSPEFLPHFTSKSCRLVN 631
           +  + P  TSP FLP   ++ CR+VN
Sbjct: 375 YDQNTPFYTSPRFLPPTKTEKCRIVN 400


>At4g30540.1 68417.m04335 glutamine amidotransferase class-I
           domain-containing protein similar to defense-related
           protein [Brassica carinata] GI:14009290; contains Pfam
           profile PF00117: glutamine amidotransferase class-I
          Length = 248

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +3

Query: 270 KLLIMYIHNLGICHRHVDVCR*K*DSLKVRDTMTGRLKLGPDFQLQGI 413
           KL +M    LGIC  H  +CR       VR    GR + GPD  L  I
Sbjct: 89  KLDVMKKKILGICFGHQIICR-------VRGGKVGRARKGPDIGLGNI 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,578,576
Number of Sequences: 28952
Number of extensions: 313818
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)