Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09f
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.17 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 321 QNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGVCG-SCAMNIDGVNTLAC 485
           QN E+++DDC P          + V+   +F  SC  G  G  C +N+D     AC
Sbjct: 217 QNCELNVDDCKPNPCQNGGTCHDLVN---SFSCSCPSGTLGYICEINVDDCRPGAC 269



 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 423 CREGVCGSCAMNIDGVNTLAC 485
           C E  C +    IDG+N+  C
Sbjct: 27  CTETSCMNGGTCIDGINSYIC 47


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 449 CDEYRRRQHSGLHQPYRSKHFQADEDL 529
           CD YR  Q    H+P++  H    + L
Sbjct: 522 CDPYRPWQTVYNHRPWQQLHLNKKQIL 548


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,078
Number of Sequences: 336
Number of extensions: 3255
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)