Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...   204   8e-54
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.72 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    28   1.3  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    26   3.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.7  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   6.7  

>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score =  204 bits (498), Expect = 8e-54
 Identities = 90/131 (68%), Positives = 108/131 (82%)
 Frame = +3

Query: 228 TFATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTL 407
           T A   S  + +KTF +YRWNP++P+ KP  Q + VDL  C PMVLDAL+KIKNE DPTL
Sbjct: 10  TSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDPTL 69

Query: 408 TFRRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFY 587
           TFRRSCREG+CGSCAMNI+G NTLACI +I ++ +KPTKIYPLPH ++VKDLVPDLT FY
Sbjct: 70  TFRRSCREGICGSCAMNINGSNTLACICNIKKD-NKPTKIYPLPHCFIVKDLVPDLTYFY 128

Query: 588 RQYQSIEPWLQ 620
           +QY+SIEPWLQ
Sbjct: 129 KQYKSIEPWLQ 139


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 183 MPLLRLTTGTFGQLRTFATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEV 335
           MP L+  T  F  +   A     +  V+  ++Y+  P+EPD  P  + FE+
Sbjct: 212 MPALQRPTSFFAAVAFAALIQYYSGAVQLCSIYKKTPEEPDGWPDKRCFEI 262


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 351  APMVLDALLKIKNEVDPTLTFRRSCREGV 437
            AP+VL+A+ K KN +    T  +SC+E +
Sbjct: 1276 APLVLEAIEKYKNALGAPDTATKSCKENL 1304


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 339 LDDCAPMVLDALLKIKNEVDPTLTFR--RSCREGVCGSCAMNID 464
           L DC   V++AL      +D  +T+R  + C + +   C  N++
Sbjct: 23  LKDCYQQVIEALSLGIRVIDSAITYRNEKECEQAIQDFCHQNVN 66


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 322 KISKWIWTTAHLWYWT 369
           +ISK++W T  L +WT
Sbjct: 91  EISKYVWDTMELKFWT 106


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 445 EPQTPSRHERLKVRVGSTSFLIFSKASNTI 356
           EP TPS H  LK  + S     FS   +TI
Sbjct: 249 EPSTPSTHSDLKELLESIKSCFFSLLPSTI 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,106
Number of Sequences: 5004
Number of extensions: 53845
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)