Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09f
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438    181   4e-46
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432...    29   2.3  
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    29   4.0  
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762...    29   4.0  
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174...    28   5.2  
08_01_0658 - 5682425-5682832,5682878-5683000                           28   6.9  
03_02_0028 - 5118621-5119448                                           27   9.2  

>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
          Length = 617

 Score =  181 bits (441), Expect = 4e-46
 Identities = 78/130 (60%), Positives = 99/130 (76%)
 Frame = +3

Query: 234 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 413
           A ++     VK F VYRW+PD P ++P+ Q++ VDL  C PMVLD L KIK E D TL F
Sbjct: 371 AAASPAPSTVKEFRVYRWSPDAPSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAF 430

Query: 414 RRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQ 593
           RRSCREG+CGSC+M IDGVNT+AC+  +D + S  T + PLPHMYVV+DLV DLT+FY+Q
Sbjct: 431 RRSCREGICGSCSMCIDGVNTVACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQ 490

Query: 594 YQSIEPWLQR 623
           Y+S+EPWL+R
Sbjct: 491 YKSVEPWLKR 500


>08_02_0757 +
           20840885-20841281,20842937-20843025,20843132-20843257,
           20843617-20844333,20844420-20844630,20844739-20845238,
           20845998-20846023,20846393-20846531,20846579-20846660,
           20846990-20847153
          Length = 816

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 318 TQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGVCGS 446
           T    +D + C   +  ALL+++ ++D  L  R+  R  VCG+
Sbjct: 740 TVRMSIDCNGCYQRIRRALLQMQEDLDSHLIDRKQQRVSVCGA 782


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 469 TPSIFIAQEPQTPSRHERLKV-RVGSTSFLIFSKASNTIGAQSSKSTSKFCV*GFLSG 299
           T S F+++ PQTPS+H    V R+     + F K  +    +S  S     +  F+SG
Sbjct: 357 TSSYFVSKNPQTPSKHSEATVKRIPLDIKVPFEKVFSKEEPKSRTSMLPESIMSFVSG 414


>02_02_0188 +
           7617838-7620231,7621856-7622071,7622167-7622328,
           7622466-7622516,7622936-7623070,7623161-7623184,
           7623341-7623452,7623776-7623901,7624004-7624053,
           7624339-7624497,7624582-7624677,7624751-7624866,
           7624907-7624984,7624985-7625108,7625193-7625306,
           7625423-7625503,7625616-7625756,7625834-7625848
          Length = 1397

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 276 VYRWNPDEPDKKPYTQNFEVDLDDCA 353
           VYRW  D    KP      VDLDDCA
Sbjct: 308 VYRW--DGTSWKPQADVLHVDLDDCA 331


>11_01_0223 +
           1746203-1746228,1746344-1746463,1746942-1747062,
           1747441-1747572,1748266-1748375,1748465-1748648,
           1749153-1749305,1749672-1749818
          Length = 330

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 378 KIKNEVDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQN 506
           K+K+E+D     +      VC +C      +N L  +SHID N
Sbjct: 148 KLKDELDGNYMIQNY----VCPNCERRYSSLNALDLVSHIDNN 186


>08_01_0658 - 5682425-5682832,5682878-5683000
          Length = 176

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 440 WFLCDEYRRRQHSGLHQPYRSKHFQADEDLSSTSHVRRQRLGPRS 574
           W L  E R R H+ +     S+ F+ +ED  +T+  R      RS
Sbjct: 32  WRLATEARGRPHAAVGPSRSSREFEVEEDDDATTASRSSASSTRS 76


>03_02_0028 - 5118621-5119448
          Length = 275

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 357 MVLDALLKIKNEVDPTLTFRRSCREGVCGSCAMNIDGVNTL 479
           +V  +   +K   DP   FRRS  E V G    + DG+  L
Sbjct: 179 VVAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERL 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,115
Number of Sequences: 37544
Number of extensions: 348009
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)