Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09f
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          31   1.0  
SB_59245| Best HMM Match : SspH (HMM E-Value=5.7)                      29   3.1  
SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          29   3.1  
SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)                     29   4.1  
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_47424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                  28   5.4  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.1  
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)                28   7.1  
SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)             28   7.1  
SB_34758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_3254| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 330 EVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGVCGS-CAMNIDGVNTLACISHIDQN 506
           E+D+DDCA    +  L     VD    +  +C+ G  GS C  N+D      C++ + +N
Sbjct: 582 EIDIDDCAK---NPCLNNGACVDQVNGYTCTCKAGFAGSRCDRNVDNCYPNPCVNGVCKN 638


>SB_59245| Best HMM Match : SspH (HMM E-Value=5.7)
          Length = 275

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 289 TPMSPTRNLIRKISKWIWTTAHLWYW 366
           T +SP   L+ K + W W+ AH  YW
Sbjct: 174 TILSPLHQLLVKDTPWNWSEAHEKYW 199


>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +3

Query: 306 KKPYT-QNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGVCGSCAMNIDGVNTLA 482
           K+ Y+ +N E+D+DDC P          N +            G CG     +DGVN   
Sbjct: 807 KEGYSGRNCEIDIDDCDP---------NNNIWNEENSNNVGAYGFCGPHGTCVDGVNRYT 857

Query: 483 CISHIDQNISK 515
           C  H   N +K
Sbjct: 858 CTCHPGWNGTK 868


>SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 299 LIGVPSIDCEGLNTFCEGC*RSKRTQLPEGTSRQPKQRHYVMLK 168
           ++ V  ++C   NT   GC  +  T+ P+   ++ KQ+  ++LK
Sbjct: 269 VVAVTCVECSMQNTALLGCMNALHTRFPDDPEQEYKQQAKLILK 312


>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 299 LIGVPSIDCEGLNTFCEGC*RSKRTQLPEGTSRQPKQRHYVMLK 168
           ++ V  ++C   NT   GC  +  T+ P+   ++ KQ+  ++LK
Sbjct: 284 VVAVTCVECSMQNTALLGCMNALHTRFPDDPEQEYKQQAKLILK 327


>SB_47424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = -1

Query: 584 KVGQIGDQVFDDVHVR*RINLRRLGNVLIDMADAGQSVDAVDIHRTRTTNALSARTSEGQ 405
           KVG  G+Q F D      +++    N   DMA     VDA  + R    +A S    +GQ
Sbjct: 63  KVGSQGEQWFKD-----SVSITSSTNYQ-DMAANSSEVDAQALVRHGQASACSEERGDGQ 116

Query: 404 GWVY-FVLNLQQSVQYHRCAVVQIHFEILRIRFLVGLIGVPSI 279
              Y +++ +  S ++H       H   L    L+ +I +P+I
Sbjct: 117 RQAYKYLIEILASAKHHCHHHHHQHHHHLFHIILITIIIIPTI 159


>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 1432

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
 Frame = +3

Query: 177  YIMPLLRLTTGTFGQLRTFATSASLAKRVKTF---------AVYRWNPDEPDKKPYTQNF 329
            Y+     ++      +R   TS+   K+++TF          VY WNP    K P+ +  
Sbjct: 1142 YLAHRYNISMEATAHVRVATTSSRRKKKLETFLRMTKIPYKTVYGWNPSSKGKLPWIEYQ 1201

Query: 330  EVDLDDCAPMVLDALLK-IKNEVDPTLTFRRSCREGVCGS 446
               + D +   +D L K    +VD  LT   S   G C S
Sbjct: 1202 GKSIAD-SNFCVDFLNKEFFVDVDEHLTVEHSSDHGYCHS 1240


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 584 KVGQIGDQVFDDVHVR*RINLRRLGNVLIDMADAGQSVDAVDIHRTRTTNAL 429
           + G +GD+  + V +     L  LGNV+  +ADA + +  V    ++ T  L
Sbjct: 850 RTGNVGDRFKESVQIN--TGLLALGNVISALADARKKILHVPYRESKVTRLL 899


>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
          Length = 560

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 204 TGTFGQLRTFATSASLAKRVKTFAVYRW 287
           T +  QL  + T      R K FA+YRW
Sbjct: 210 TASINQLSDYLTECFSTDREKAFAIYRW 237


>SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 393 VDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPT 521
           VDP +T   +   G C  C  N  G N   C+S    N +  T
Sbjct: 84  VDPGVTGNCNTTTGECLKCLYNTSGFNCQWCVSGFHGNATAKT 126


>SB_34758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 573 LTNFYRQYQSIEPWLQR 623
           + +FY QY+SIEP+L++
Sbjct: 1   MAHFYEQYRSIEPYLKK 17


>SB_3254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 524 LRRLGNVLIDMADAGQSVDAVDI 456
           LR+L N+L ++ D+G+  DA+D+
Sbjct: 110 LRKLDNLLDELTDSGRFQDAIDV 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,809,224
Number of Sequences: 59808
Number of extensions: 409647
Number of successful extensions: 1272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)