Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o09f
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47809-2|CAA87780.1| 298|Caenorhabditis elegans Hypothetical pr... 203 9e-53
AB008569-1|BAA23717.1| 297|Caenorhabditis elegans iron-sulfur s... 203 9e-53
S50380-1|AAB24366.1| 161|Caenorhabditis elegans succinate-ubiqu... 116 2e-26
Z68227-17|CAA92508.2| 348|Caenorhabditis elegans Hypothetical p... 28 6.2
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p... 27 8.2
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 27 8.2
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor... 27 8.2
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ... 27 8.2
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase... 27 8.2
>Z47809-2|CAA87780.1| 298|Caenorhabditis elegans Hypothetical
protein F42A8.2 protein.
Length = 298
Score = 203 bits (495), Expect = 9e-53
Identities = 88/130 (67%), Positives = 103/130 (79%)
Frame = +3
Query: 234 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 413
A + R+KTF +YR+NP+ P KP Q F+VDLD C M+LDAL+KIKNEVDPTLTF
Sbjct: 44 AKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTF 103
Query: 414 RRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQ 593
RRSCREG+CGSCAMNI G NTLACI ID + SK TKIYPLPHM+VVKDLVPD+ FY Q
Sbjct: 104 RRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQ 163
Query: 594 YQSIEPWLQR 623
Y SI+PW+Q+
Sbjct: 164 YASIQPWIQK 173
>AB008569-1|BAA23717.1| 297|Caenorhabditis elegans iron-sulfur
subunit of mitochondrialsuccinate dehydrogenase protein.
Length = 297
Score = 203 bits (495), Expect = 9e-53
Identities = 88/130 (67%), Positives = 103/130 (79%)
Frame = +3
Query: 234 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 413
A + R+KTF +YR+NP+ P KP Q F+VDLD C M+LDAL+KIKNEVDPTLTF
Sbjct: 43 AKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTF 102
Query: 414 RRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQ 593
RRSCREG+CGSCAMNI G NTLACI ID + SK TKIYPLPHM+VVKDLVPD+ FY Q
Sbjct: 103 RRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQ 162
Query: 594 YQSIEPWLQR 623
Y SI+PW+Q+
Sbjct: 163 YASIQPWIQK 172
>S50380-1|AAB24366.1| 161|Caenorhabditis elegans
succinate-ubiquinone oxidoreductasecomplex II
iron-sulfur subunit protein.
Length = 161
Score = 116 bits (278), Expect = 2e-26
Identities = 49/67 (73%), Positives = 56/67 (83%)
Frame = +3
Query: 423 CREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQS 602
CREG+CGSCAMNI G NTLACI ID + SK TKIYPLPHM+VVKDLVPD+ FY QY S
Sbjct: 1 CREGMCGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYAS 60
Query: 603 IEPWLQR 623
I+PW+Q+
Sbjct: 61 IQPWIQK 67
>Z68227-17|CAA92508.2| 348|Caenorhabditis elegans Hypothetical
protein F49C12.3 protein.
Length = 348
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 593 LPVKVGQIGDQVFD-DVHVR*RINLRRLGNVLIDMADAGQSVDAVDIHRTRTTNAL 429
+P V +I FD D H++ + N+LID+ +S++AV +R T L
Sbjct: 66 IPNAVSRIVAIAFDKDAHLKLHEKYPNIPNILIDLTPLKKSIEAVQENREYLTYGL 121
>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 447 CAMNIDGVNTLACISHIDQNISK 515
C ++G+ +C+ +I++NISK
Sbjct: 252 CTFAVEGMTCASCVQYIERNISK 274
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
C27A7.4 protein.
Length = 1403
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 386 ERSRPNPDLQTFVPRGRLWFLCDEYR 463
++ PN DL+TFV L +CDE R
Sbjct: 1347 QKKVPNVDLETFVETSTLDKVCDEMR 1372
>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
transporting ATPase protein.
Length = 1238
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 447 CAMNIDGVNTLACISHIDQNISK 515
C ++G+ +C+ +I++NISK
Sbjct: 252 CTFAVEGMTCASCVQYIERNISK 274
>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 447 CAMNIDGVNTLACISHIDQNISK 515
C ++G+ +C+ +I++NISK
Sbjct: 252 CTFAVEGMTCASCVQYIERNISK 274
>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
protein.
Length = 1116
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 447 CAMNIDGVNTLACISHIDQNISK 515
C ++G+ +C+ +I++NISK
Sbjct: 130 CTFAVEGMTCASCVQYIERNISK 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,700
Number of Sequences: 27780
Number of extensions: 305680
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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