Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o09f
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s...   195   2e-50
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s...   195   2e-50
At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur s...   189   1e-48
At5g18400.2 68418.m02165 expressed protein contains Pfam profile...    32   0.36 
At5g18400.1 68418.m02164 expressed protein contains Pfam profile...    32   0.36 
At4g01900.1 68417.m00250 P II nitrogen sensing protein (GLB I) i...    29   3.3  
At3g24900.1 68416.m03122 disease resistance family protein / LRR...    29   3.3  
At4g01470.1 68417.m00190 major intrinsic family protein / MIP fa...    27   7.7  

>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-2) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
          Length = 280

 Score =  195 bits (476), Expect = 2e-50
 Identities = 87/140 (62%), Positives = 110/140 (78%)
 Frame = +3

Query: 204 TGTFGQLRTFATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKI 383
           T T  + ++ A++      +KTF +YRWNPD P K P  Q++++DL DC PMVLDAL+KI
Sbjct: 29  TSTGSEAQSKASTGGGGASLKTFQIYRWNPDNPGK-PELQDYKIDLKDCGPMVLDALIKI 87

Query: 384 KNEVDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDL 563
           KNE+DP+LTFRRSCREG+CGSCAMNIDG N LAC++ I+   SK T I PLPHM+V+KDL
Sbjct: 88  KNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDL 146

Query: 564 VPDLTNFYRQYQSIEPWLQR 623
           V D+TNFY QY+SIEPWL+R
Sbjct: 147 VVDMTNFYNQYKSIEPWLKR 166


>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-1) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
          Length = 279

 Score =  195 bits (475), Expect = 2e-50
 Identities = 89/141 (63%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
 Frame = +3

Query: 204 TGTFGQLRTFATSAS-LAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLK 380
           T T  +  T A+S       +KTF +YRWNPD P K P  QN+++DL DC PMVLDAL+K
Sbjct: 29  TSTGAEAETKASSGGGRGSNLKTFQIYRWNPDNPGK-PELQNYQIDLKDCGPMVLDALIK 87

Query: 381 IKNEVDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKD 560
           IKNE+DP+LTFRRSCREG+CGSCAMNIDG N LAC++ I    S+ T I PLPHM+V+KD
Sbjct: 88  IKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASE-TTITPLPHMFVIKD 146

Query: 561 LVPDLTNFYRQYQSIEPWLQR 623
           LV D+TNFY QY+SIEPWL+R
Sbjct: 147 LVVDMTNFYNQYKSIEPWLKR 167


>At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-3) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-3) [gi:12049602] from Arabidopsis thaliana
          Length = 309

 Score =  189 bits (460), Expect = 1e-48
 Identities = 80/119 (67%), Positives = 98/119 (82%)
 Frame = +3

Query: 264 KTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGVCG 443
           K F +YRWNPD+P+ KP+ Q+F VDL  C PMVLD L KIK E D +L++RRSCREG+CG
Sbjct: 67  KEFKIYRWNPDKPNSKPFLQSFFVDLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICG 126

Query: 444 SCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQ 620
           SC+MNIDG NT+AC+  I+ N SKPT I PLPHMYV+KDLV DLTNFY+QY+S+EPWL+
Sbjct: 127 SCSMNIDGTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLK 185


>At5g18400.2 68418.m02165 expressed protein contains Pfam profile
           PF05093: Protein of unknown function (DUF689)
          Length = 272

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
 Frame = +3

Query: 306 KKPYTQNFEVDLDDCAPMV-LDALLKIKNEVDPTL-------TFRRSCREGVCG 443
           KKP T  F++DLDD   ++  D+LL  ++ + P L       T +++C+  VCG
Sbjct: 155 KKPVTNLFKIDLDDDVDLIDEDSLLTEEDLMKPQLPVASGCETTKKACKNCVCG 208


>At5g18400.1 68418.m02164 expressed protein contains Pfam profile
           PF05093: Protein of unknown function (DUF689)
          Length = 269

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
 Frame = +3

Query: 306 KKPYTQNFEVDLDDCAPMV-LDALLKIKNEVDPTL-------TFRRSCREGVCG 443
           KKP T  F++DLDD   ++  D+LL  ++ + P L       T +++C+  VCG
Sbjct: 152 KKPVTNLFKIDLDDDVDLIDEDSLLTEEDLMKPQLPVASGCETTKKACKNCVCG 205


>At4g01900.1 68417.m00250 P II nitrogen sensing protein (GLB I)
           identical to P II nitrogen sensing protein GLB I
           (GI:7268574) [Arabidopsis thaliana]; similar to nitrogen
           regulatory protein P-II (PII signal transducing protein)
           (SP:O30794) {Nostoc punctiforme}
          Length = 196

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +3

Query: 480 ACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPW 614
           +C+  + ++ S  +++ P+    +  D +PD + FY+    + PW
Sbjct: 41  SCLDLVTKSPSNNSRVLPVVSAQISSDYIPD-SKFYKVEAIVRPW 84


>At3g24900.1 68416.m03122 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 884

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 333 VDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGV-CGSCAMNIDGVNTLACISHIDQNI 509
           V L  C P  + A  + KNE D           GV C +    +  +   AC+S   ++ 
Sbjct: 33  VGLGACGPHQIQAFTQFKNEFDTHACNHSDSLNGVWCDNSTGAVMKLRLRACLSGTLKSN 92

Query: 510 SKPTKIYPLPHMYV 551
           S   + + L H+Y+
Sbjct: 93  SSLFQFHQLRHLYL 106


>At4g01470.1 68417.m00190 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 252

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 277 SIDGTPMSPTRNLIRKISKWIWTTAHLWYW 366
           + DG  M+P  +    +  WIWT  H  YW
Sbjct: 192 AFDGASMNPAVSFGPAVVSWIWTN-HWVYW 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,194
Number of Sequences: 28952
Number of extensions: 282420
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)