Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o08r
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07777.1 68415.m00893 expressed protein 30 0.38
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 29 1.2
At1g73090.1 68414.m08451 expressed protein 28 1.5
At3g21510.1 68416.m02714 two-component phosphorelay mediator 3 (... 28 2.0
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 2.7
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 27 2.7
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 27 2.7
At5g58720.1 68418.m07356 PRLI-interacting factor, putative simil... 27 3.5
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 27 3.5
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF... 27 4.6
At4g30010.1 68417.m04270 expressed protein 26 6.1
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta... 26 6.1
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit... 26 6.1
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 26 8.1
At5g03350.1 68418.m00288 legume lectin family protein contains P... 26 8.1
At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family / di... 26 8.1
At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit... 26 8.1
>At2g07777.1 68415.m00893 expressed protein
Length = 262
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 99 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLA 263
LS+ V FF G+++ S F+L ++ S +FR L R+T C LA
Sbjct: 11 LSSSVAGFFGRFLGSESVSRFNLIIFLILLVFSICLFRSLKQYLGKRMTQWCYLA 65
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 232 APKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 74
A KE+ +ES + + +L+E+ + + ETVKK+ G ++ N+ N+
Sbjct: 570 AEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNM 622
>At1g73090.1 68414.m08451 expressed protein
Length = 306
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 146 LGPGDC*EKLWHDGRQLQRI 87
+GPG C + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291
>At3g21510.1 68416.m02714 two-component phosphorelay mediator 3
(HP3) identical to ATHP3 [Arabidopsis thaliana]
GI:4156245
Length = 154
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 99 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFA-LSASVFRLL---SSLGASRLTNACTLAR 266
+S +V FF D + SL+ +V F + V +L SS+GA R+ NAC + R
Sbjct: 42 VSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFR 101
Query: 267 QIANK 281
+
Sbjct: 102 SFCEQ 106
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 256 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESA 146
VH KRD+ + L ESA++ ++EL + + S+
Sbjct: 563 VHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSS 599
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 214 SLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYK 80
SL T E K + E + E ALA + V +NF ++++ +F K
Sbjct: 1171 SLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSIINKGKKFAK 1215
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 238 RDAPKEDNSLNTLAESAKKTIEELR-EKVESALAPETVKKNF 116
RDA +E +L + E KKT +E + +KVE A + VK NF
Sbjct: 104 RDAAREA-ALREIKERIKKTKDEKKAKKVEFASKQQKVKANF 144
>At5g58720.1 68418.m07356 PRLI-interacting factor, putative similar
to PRLI-interacting factor N [Arabidopsis thaliana]
GI:11139276; contains Pfam profile PF01713: Smr domain
Length = 519
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 241 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 62
KR + + T ++ KK +EE R+ E E V KNF ++S E + ++ E
Sbjct: 12 KRSCAAKPSGDGTTSDGNKKDVEEERKDGEGKREIENVGKNF---IESLMEAFCSVSMEE 68
Query: 61 APKA 50
A A
Sbjct: 69 AMAA 72
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 129 TVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNAC 254
T G + S+FSL+S+ F + + LLS+ G + C
Sbjct: 105 TALGYQLGSSFSLSSNNKFTLVGCNALSLLSTFGKQNYSTGC 146
>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
identical to alpha-glucosidase I (GI:16506680,
GI:13398928) [Arabidopsis thaliana]
Length = 852
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 285 LSCWLSASPMCMHSSNEMLLKK 220
L CW+ + CMHS E+L K+
Sbjct: 603 LRCWMYLAADCMHSITELLGKE 624
>At4g30010.1 68417.m04270 expressed protein
Length = 90
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 199 AESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFY 83
+E K + EL ++S + ETVK + +D++NE Y
Sbjct: 8 SEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKY 46
>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
weak similarity to Pre-mRNA cleavage complex II protein
Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
Length = 808
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 308 IQNEQAADYLVGYLPRQC-ACIRQTRC 231
I+NE A L G LPRQC C + +C
Sbjct: 636 IRNESAISALYGDLPRQCTTCGLRFKC 662
>At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q43867, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 194
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 144 KADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLAR 266
K + S+ ++VFF LS + L S S + NAC++ R
Sbjct: 2 KTPMSSSITFALVFFLLSLNPTSSLPSKRESYVQNACSVTR 42
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 223 EDNSLNTLAESAKKTIEELREKVESA 146
E N ++ ESA++ +EE++ +E A
Sbjct: 410 EKNDIHAAVESARRELEEVKANIEKA 435
>At5g03350.1 68418.m00288 legume lectin family protein contains Pfam
domain, PF00139: Legume lectins beta domain
Length = 274
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -2
Query: 196 ESAKKTIEELREKVESALAPETVKK 122
E K IE KV LAPETVKK
Sbjct: 201 ERYKAWIEYRNSKVTVTLAPETVKK 225
>At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family /
dihydrokaempferol 4-reductase family similar to
dihydroflavonol 4-reductase (SP:P51102), vestitone
reductase (Medicago sativa, GI:973249)
Length = 364
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 229 PKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 110
P + NS T K+T++ L ++S L +TVK+ F T
Sbjct: 121 PMDPNSNETEETVTKRTVQGLMGILKSCLDAKTVKRFFYT 160
>At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At19), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 200
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 247 FVKRDAPKEDNSLNTLAESAK--KTIEELREKVESALAPETVK 125
+ K+ +D+ + T S K KT+EE ++K + PE+ +
Sbjct: 58 YCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTE 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,124,362
Number of Sequences: 28952
Number of extensions: 130036
Number of successful extensions: 430
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -