Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o08f
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   1.9  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     28   2.5  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     27   5.7  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  27   7.6  
SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05)                 27   7.6  
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)               26   10.0 
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)                   26   10.0 

>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 110 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK 229
           KRDAP  DN       S KK    L   +E+  +P +  K
Sbjct: 780 KRDAPLRDNDEQFRTYSRKKQHASLESSIEAPCSPRSASK 819


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 110 KRDAPKEDNSLNTLAESAKKTIEELREKVE 199
           KR APK+ N+ + L    +K  EELR++ +
Sbjct: 62  KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 388  ENFYSIMSRTLLHSIYLGL 332
            E  +SIMS  LLH ++LGL
Sbjct: 3818 EEMFSIMSSVLLHLVFLGL 3836


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 107 VKRDAPKEDNSLNTLAESAKKTIEELREKVESAL 208
           ++R   ++DN L ++ E  K T EEL+  +E  +
Sbjct: 172 LQRQLSQKDNQLQSMKEDVKNTEEELKLDLEKVI 205


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/62 (24%), Positives = 23/62 (37%)
 Frame = +2

Query: 98  HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 277
           H     D  K +       E  KK + ++RE+  S L P    +       SF   +  +
Sbjct: 80  HGLASHDKKKRERPSLVARERMKKRLRKIREEFGSELLPIVYVREIVLAYISFCRLFMYV 139

Query: 278 KP 283
           KP
Sbjct: 140 KP 141


>SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05)
          Length = 315

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 143 NTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNE 262
           N  A S KK + +  + + S   PE +KK     VDS  E
Sbjct: 81  NRAANSVKKELNKFADWILS-FVPEPIKKTVNKQVDSLKE 119


>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
          Length = 283

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 110 KRDAPKEDNSLNTLAESAKKT-IEELREKVESALAPETVKKNFGTMVDSFNE 262
           K+   +ED  L       KK+  E+   K E  + P+  +K+F     +FN+
Sbjct: 70  KKKRQREDKQLGEEPSKVKKSKTEQEHVKTEKGVTPQNSQKHFEKKPKNFNK 121


>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
          Length = 908

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -1

Query: 207 KADSTFSLNSSIVFFALSASVFRLLSSLG-ASRLTNACTLARQIAN 73
           K   T   NS  ++F L   V R  SSL   S   N C LA    N
Sbjct: 763 KDSRTLKPNSDYIYFDLKQKVVRSASSLSYPSVCRNGCCLANPCLN 808


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,337
Number of Sequences: 59808
Number of extensions: 210258
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)