Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o06r
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 43 3e-04
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 41 0.001
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 37 0.015
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 37 0.015
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 37 0.020
SB_2441| Best HMM Match : CBM_14 (HMM E-Value=2.1e-09) 36 0.035
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 33 0.32
SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45) 32 0.56
SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 30 2.3
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 29 3.0
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41) 29 5.3
SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14) 28 7.0
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Frame = -2
Query: 735 PPQPTE----LCPHQFGYFKLGDARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPD 568
PPQPT C + D NC+GF C NG Y CP L F+++ CEWP+
Sbjct: 586 PPQPTPPKSPFCEEKKNG-DYADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPN 644
Query: 567 EVADCDAEAFLGFRCPEVPIS--RELGPPAGYRYYRSDNNCQKYFLCIDGHPRVLYCGGE 394
+V + + P S E G YR +NC Y +C G+ C
Sbjct: 645 KVNCKSRPTTVPYVTKPTPPSGNSEFCKKNGNGRYRDPHNCLGYIVCRGGNIYFRNCRRG 704
Query: 393 SAFDDLTSTC 364
F+ +T C
Sbjct: 705 LRFNGVTKRC 714
Score = 57.6 bits (133), Expect = 1e-08
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGY-DFVCPDGLAFNSETYRCEWPDEVADCDAEAFLGFRCPEVPIS 505
D+ NC+ + C NG + CP GLAFN C++P V C + GF C E
Sbjct: 326 DSSNCNLYITCSNGFTIANRHCPTGLAFNEAIGMCDYPSNVPGCSGSSGSGF-CHEKSDG 384
Query: 504 RELGPPAGYRYYRSDNNCQKYFLCIDGHPRVLYCGGESAFDDLTSTCVSAD 352
Y+ NC + +C +GH + C G++ FD C D
Sbjct: 385 N----------YKDSGNCHGFIMCSNGHTYHMTCPGQTNFDPAKKRCEDYD 425
Score = 51.2 bits (117), Expect = 9e-07
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Frame = -2
Query: 690 KLGDARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEVADCDAEAFLGFRCPE-V 514
K DA NC+GF C NG Y CP L ++ RCEW D V DC + P+
Sbjct: 525 KYADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTV-DCGQRPTISPHPPKPT 583
Query: 513 PISRELGPPAG-------YRYYRSDNNCQKYFLCIDGHPRVLYCGGESAFDDLTSTC 364
+ + PP Y +NC + C +G+ C FD C
Sbjct: 584 TMPPQPTPPKSPFCEEKKNGDYADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLEC 640
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEVADCDAEAFLGFRCP---EVP 511
D C GF +C N + Y CP+ L FN T C+ P+ V C + P + P
Sbjct: 453 DPDACEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENV-QCGPTRPPTPKVPPTTKAP 511
Query: 510 ISRE---LGPPAGYRYYRSDNNCQKYFLCIDGHPRVLYCGGESAFDDLTSTCVSADEV 346
++ +G G Y NNC + +C +G+ + C +D C AD V
Sbjct: 512 FTKSPFCVGKQNG--KYADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTV 567
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFVCPDGLAFN 598
DA NC+GF C N + Y F CP L FN
Sbjct: 741 DAVNCNGFIKCSNQLTYYFDCPSNLRFN 768
Score = 35.5 bits (78), Expect = 0.046
Identities = 21/58 (36%), Positives = 25/58 (43%)
Frame = -2
Query: 735 PPQPTELCPHQFGYFKLGDARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEV 562
P +E C G + D NC G+ C G Y C GL FN T RC+ P V
Sbjct: 664 PSGNSEFCKKN-GNGRYRDPHNCLGYIVCRGGNIYFRNCRRGLRFNGVTKRCDLPRNV 720
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEV 562
+ NC GF C G+ + CP GL FN++ C+W EV
Sbjct: 468 EKENCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEV 507
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 669 CSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWP 571
C + C NG+ Y+ CP GL +N E C+WP
Sbjct: 100 CKMYIACSNGIAYEMPCPAGLNWNDEKKYCDWP 132
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEV 562
D ++CS + C G + CPDGL FN+ C+ P +V
Sbjct: 238 DPKDCSAYYQCKKGRSFKKFCPDGLKFNALIKSCDEPSKV 277
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 669 CSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEVADC 553
C GF +C N CP GL +N +T +C+WP V DC
Sbjct: 91 CRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNV-DC 128
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 37.1 bits (82), Expect = 0.015
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -2
Query: 681 DARNCSGFRNC-VNGVGYDFVCPDGLAFNSETYRCEWPDEVADCDAEAFL--GFRCP-EV 514
D RNCS F C + CP GL ++ C+WP V DCD FRC
Sbjct: 125 DPRNCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYV-DCDIGGAYKPPFRCNLRD 183
Query: 513 PISRELGPPAGY 478
PI +++G G+
Sbjct: 184 PIPKKIGCLKGW 195
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 37.1 bits (82), Expect = 0.015
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -2
Query: 681 DARNCSGFRNC-VNGVGYDFVCPDGLAFNSETYRCEWPDEVADCDAEAFL--GFRCP-EV 514
D RNCS F C + CP GL ++ C+WP V DCD FRC
Sbjct: 32 DPRNCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYV-DCDIGGAYKPPFRCNLRD 90
Query: 513 PISRELGPPAGY 478
PI +++G G+
Sbjct: 91 PIPKKIGCLKGW 102
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 672 NCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEVADCD 550
NC + C N + Y+ CP GL +N C+WP A C+
Sbjct: 75 NCKMYITCSNKITYERQCPAGLNWNDAKKWCDWPKN-APCE 114
>SB_2441| Best HMM Match : CBM_14 (HMM E-Value=2.1e-09)
Length = 98
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDE 565
D +N S F C NGV + C GL FN + CE PD+
Sbjct: 17 DEKNPSKFVICYNGVREERECAKGLVFNPKEKICEQPDQ 55
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFV--CPDGLAFNSETYRCEWPDEVADCD 550
D R+CS F C + F+ CP GL ++ + C+WP V DCD
Sbjct: 1148 DPRDCSRFYQC-DAFHKTFLHRCPAGLKWSVKKTACDWPRYV-DCD 1191
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFV--CPDGLAFNSETYRCEWPDEVADCD 550
D R+CS F C + F+ CP GL ++ + C+WP V DCD
Sbjct: 898 DPRDCSKFYQC-DAFHRAFLHRCPAGLKWSVKKTACDWPRYV-DCD 941
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFV--CPDGLAFNSETYRCEWPDEVADCD 550
D R+CS F C + F+ CP GL ++ + C+WP V DCD
Sbjct: 1248 DPRDCSRFYQC-DAFHRAFLHRCPAGLKWSVKKTACDWPRYV-DCD 1291
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 681 DARNCSGFRNC-VNGVGYDFVCPDGLAFNSETYRCEWPDEVADCD 550
D R+CS F C + + CPDGL ++ + C+ P V DCD
Sbjct: 1353 DPRDCSRFYQCDASHKTFLHRCPDGLKWSVKKTACDLPLYV-DCD 1396
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFV--CPDGLAFNSETYRCEWPDEVADCD 550
D +CS F C + F+ CP GL ++ + C+WP V DCD
Sbjct: 1003 DPMDCSRFYQC-DAFHRAFLHRCPAGLKWSVKKTTCDWPRYV-DCD 1046
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 32.7 bits (71), Expect = 0.32
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 669 CSGFRNCVNGVGYDFVCPDGLAFNSETYRCE 577
C + C NG+ ++ CP GL +N T C+
Sbjct: 350 CDMYITCSNGIAHEMPCPAGLNWNDVTKECD 380
>SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45)
Length = 348
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 651 CVNGVG-YDFVCPDGLAFNSETYRCEWPDEVADCD 550
C+N G Y CP G+++N T CE DE A D
Sbjct: 127 CINTPGSYKCECPSGMSYNHGTGTCEDKDECASPD 161
>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 681 DARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWPDEVADC 553
D C G+ +CV+G Y CP G + + C P +DC
Sbjct: 182 DTSRCDGYVSCVSGYIYYMPCPAGTQWKNAEDACVDP-SASDC 223
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 729 QPT-ELCPHQFGYFKLGDARNCSGFRNCVNGVGYDFVCPDG 610
QPT + CP GY+ DA+ C C GV +CP+G
Sbjct: 2742 QPTCDPCPA--GYYCDPDAKKCPSHNYCPAGVTVPILCPNG 2780
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 313 SPCQGRRKATARQRSRIQCVSANTKTV 233
SP +G R + RQRSR+ V+ +TKTV
Sbjct: 193 SPRRGGRGGSPRQRSRLLAVTEDTKTV 219
>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 714 CPHQFGYFKLGDARNCSGFRNCVNGVGYDFVCPDGLAFNSETYRCEWP 571
C G F D N +G+ +CV+GVG C DGL + ++ C+ P
Sbjct: 172 CKSPDGMF--ADPYNEAGYIHCVSGVGKRVNCGDGLVWEKKS--CQKP 215
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 531 IRGKLQHRSRRLHQAIRSGRSQN*KPVRRDIQNRSLHRSRSF*IRCNCGRR 683
IR KL+HR + + R RS+ K +RR ++ R RSR GRR
Sbjct: 1837 IRRKLRHRRQVNRRRRRRQRSRRRKAIRRILRRRFGRRSRRINRHGRLGRR 1887
>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1147
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -2
Query: 651 CVNGVG-YDFVCPDGLAFNSETYRCEWPDEVADCDAEAFLGFRCPEVPISRELGPPAGYR 475
C N +G Y CP GL + + +C+ DE A+ L +C S P G
Sbjct: 918 CQNTIGSYICTCPKGLRHDPSSGKCKDIDECAEYHHLCGLKGQCVNTVGSYRCNCPPGID 977
Query: 474 YYRSDNNC 451
R N C
Sbjct: 978 LDRKTNMC 985
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 651 CVNGVG-YDFVCPDGLAFNSETYRCEWPDEVAD 556
C N +G Y VCPDG+ + CE +E +D
Sbjct: 188 CYNTMGSYKCVCPDGMELMKDGVSCEDKNECSD 220
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 283 QLLCVVLGTDCCGP*LSRTCSYFIGGDT 366
QLLC V+ T CC P S T + GDT
Sbjct: 3489 QLLCNVMETPCCFPGDSSTTGAQLSGDT 3516
>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
Length = 653
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 654 NCVNGVG-YDFVCPDGLAFNSETYRCEWPDEVAD 556
NC N +G Y CP G + N+E +C DE A+
Sbjct: 468 NCKNTLGSYKCQCPLGYSMNNEMKKCVDRDECAE 501
>SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)
Length = 327
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 502 STYWYFGATESEESFSIAVGDF 567
S YW FG++ S + + IA+ DF
Sbjct: 129 SCYWRFGSSASSKGYKIAIMDF 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,475,291
Number of Sequences: 59808
Number of extensions: 429627
Number of successful extensions: 1197
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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