Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o06r
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   3.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.3  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 459 NNCQKYFLCIDGHPRVLYCGGESAFDDLTST 367
           NN   Y   ++G+  ++Y   + +F  LTS+
Sbjct: 196 NNTWVYIADVEGYALIIYNNADDSFQRLTSS 226


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 102 LFIKKNIVKIGNLIIRLDKMCFRN 173
           LF+   +   GN I  +D + FRN
Sbjct: 406 LFVLNRLTLSGNAIASIDPLAFRN 429


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 681 DARNCSGFRNCVNGVGYDFV 622
           D++N  GF   V G+GYDF+
Sbjct: 251 DSQNEVGFYE-VEGIGYDFI 269


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 621 CPDGLAFNSETYRCEWPDEVADCDAE 544
           CPDGL   S+   C   D +   D +
Sbjct: 64  CPDGLKLLSDGLMCVEKDSIHSIDGD 89


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 546 QHRSRRLHQAIRSGRSQN*KPVRRDIQNRSLHRSR 650
           QH S R  +  R  R +N +  ++D Q   LH  +
Sbjct: 225 QHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEK 259


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 732 PQPTELCPHQFGYF 691
           P  T+ CP QFG F
Sbjct: 138 PMDTQRCPLQFGSF 151


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -2

Query: 132 LFLQCFF**ITSCFNIIKSRSIILNDNGIVYPSSLNNLLLIM 7
           +F+   F  IT+C  IIK+ ++    N  ++  ++++L+L++
Sbjct: 50  IFVTGIFGNITTCTVIIKNPAMQTATNYYLFSLAISDLILLV 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,992
Number of Sequences: 438
Number of extensions: 4380
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)