Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o06f
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.39 
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    29   0.52 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   1.6  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.1  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    25   8.5  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = -3

Query: 536 FAAVGLRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRW---L*RG 366
           FA+ GL+    ++ T KI  YT+  +    AIA       S ++  +  ++ W   L  G
Sbjct: 323 FASSGLKTNISTLNTGKIWGYTIGTI--CVAIASKM---GSSMLAARILKMPWSDSLVVG 377

Query: 365 SFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAF 246
           S  +   +  L  + I +  GI+ ETI + F+F   I  F
Sbjct: 378 SLMSCKGLVELIVLNIGLSTGILNETIFSMFVFMAVITTF 417


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = -3

Query: 371 RGSFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAFNISVAASGHWIPFVQFPA 192
           R + +  +   +  R + +  +   T+T  A F+F    D  N+ V   G    F  FP 
Sbjct: 307 RRNLQRTYGEEISQRPFYKTRICYYTDTADAEFVFDYHPDYENLFVCTGGSGHGFKFFPI 366

Query: 191 LSSRPDGCLF 162
           L     GC+F
Sbjct: 367 LGKYSIGCMF 376


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 35   SVHLLCRHGEDFCDLDVLLRLCLHTNTV---PAFWTDKSLPKSVPGTSTRQAYWTMQGTE 205
            +VHLL  + E FC++   + L L   T+    A WT K L K      ++ +    + T 
Sbjct: 1026 AVHLLIENFEKFCEVPREISLLLDDPTLFYNNAAWTSKELYKRCEEIISQMSL-DERNTP 1084

Query: 206  RKVSSVRKLRQ 238
            +  +S ++ RQ
Sbjct: 1085 KHTASTKRKRQ 1095


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 59  GEDFCDLDVLLRLCLHTNTVPAFWTDKSLPKSV---PGTSTRQAYWTMQGTERKVSSVRK 229
           GED C+L   +R+C    T+P    +     S+   P  +  +   + +GT R  +   K
Sbjct: 159 GEDLCELQDAIRICFSCFTLPQQTMESPFATSMSKAPAKTESRGSNSFEGTSRLANLGAK 218

Query: 230 L 232
           L
Sbjct: 219 L 219


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 14  CEDRSNVSVHLLCRHGEDFCDLDVLL--RLCLHTNTVPAFWTDKSL 145
           C+DR +  ++ +   G    +LD+ L  RL    N +PA     SL
Sbjct: 160 CDDRVHALIYFISPTGHGLRELDIELMRRLAPRVNIIPAIAKADSL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,042
Number of Sequences: 5004
Number of extensions: 58173
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)