Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o06f
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 31 0.53
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 29 2.8
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548... 29 2.8
01_03_0127 + 12787664-12787907,12790660-12790715,12792203-127924... 29 2.8
01_01_0796 + 6190931-6192745 29 3.8
09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122 28 5.0
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 6.6
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357... 27 8.7
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 27 8.7
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 521 LRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRWL*RGSFETR 351
L+ + Q+ G + AY HA+S+ I G+ F M FCR + GS + R
Sbjct: 545 LQYQQQTDGFEESYAYLEHAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSLKFR 601
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 274 NYAPMVSVTIPT*ISMYIRASTLTKCRVSNDPRYSHRNRQNCVPINSDTSN*ATPAIAAD 453
N + T+PT IS TL RVSN+ +S + C+ N TP++++D
Sbjct: 635 NMSSTYIATLPTEISKLQCLRTLRCTRVSNNNNFSINHPVKCLTNTMCLPNIFTPSVSSD 694
Query: 454 S 456
+
Sbjct: 695 N 695
>02_01_0735 +
5484398-5484400,5484670-5484773,5485012-5485138,
5485212-5485306,5485597-5485720,5486523-5486603,
5487177-5487275,5487416-5487583,5487688-5487775,
5487860-5487930,5488000-5488068,5488368-5488499,
5488740-5488946
Length = 455
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 327 PCQYPNEVPCLERSSLQPPQPTELCPHQFGYFKLGDARNCSGFRNCVNGV 476
P Y + V ++L PPQ C + G FK+G N S ++G+
Sbjct: 228 PQSYYDSVSMFFYNTLHPPQLPVKCSNNLGAFKVGTVTNESFIFEIISGL 277
>01_03_0127 +
12787664-12787907,12790660-12790715,12792203-12792473,
12792600-12792832
Length = 267
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 381 PQPTELCPHQFGYFKLGDARNCSGFRNCVNGVGYDFVCPDGLAF 512
P P+ C + F GD+ +G G+GY F P+G AF
Sbjct: 22 PSPSASCARRPVVFAFGDSNTDTG--GIAAGMGYYFPLPEGRAF 63
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +3
Query: 267 EEKLCPDGLRYNPNVNFDVYPCQYPNEVPCLERSSLQPPQPTELCPHQFGYFKLGDARNC 446
E L P YN ++ P +Y N E L QP G+ +G+ N
Sbjct: 481 EAHLPPAAQEYNQDLAVQQQPQEYENYDYMFENVGLSQAQPVAAGAGDAGFAAIGNDDNP 540
Query: 447 SGFRNCVNGVGYD 485
G++ V YD
Sbjct: 541 FGYQQLVASPLYD 553
>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
Length = 530
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 183 TGQCRELNERYPVSGSCDRYIECINGTAEEKLC 281
T CRE RY + GSC I+ + E KLC
Sbjct: 28 TNCCRERVWRYAMHGSCSIDIQRLAADLETKLC 60
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 264 AEEKLCPDGLRYNPNVNFDVYPCQYPNEV 350
AE +L DGL Y+PN +D+ C + + V
Sbjct: 42 AESELVCDGLFYHPNEIWDLKSCPFDHRV 70
>06_03_0498 -
21432958-21434245,21434579-21435310,21435502-21435788,
21435955-21436026,21436130-21436264,21436887-21436925
Length = 850
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 101 LHTNTVPAFWTDKSLPKSVPGTSTRQAYWTMQ 196
L NTVP W++ K TR+ +W Q
Sbjct: 542 LTRNTVPDTWSEYQFEKQAAKLYTRKIFWAFQ 573
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 263 GSIDAFNISVAASGHWIPFVQFPALSSRPDGCLF 162
G I +F+ + + + +PF F ++S D CLF
Sbjct: 564 GDIVSFDTTYKTNRYDLPFAPFVGITSHGDNCLF 597
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,997
Number of Sequences: 37544
Number of extensions: 405724
Number of successful extensions: 1174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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