Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o06f
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   0.99 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.7  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   2.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   3.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.0  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   4.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   4.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 39  YTCCA-DMERTFVILTCFCAFVYTQTQYQP 125
           Y C + D  R FV + C C     + +YQP
Sbjct: 390 YACWSRDFRRAFVRILCACCPGRVRRRYQP 419


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 432 DARNCSGFRNCVNGVGYDFV 491
           D++N  GF   V G+GYDF+
Sbjct: 251 DSQNEVGFYE-VEGIGYDFI 269


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 492 CPDGLAFNSETYRCEWPDEVADCDAE 569
           CPDGL   S+   C   D +   D +
Sbjct: 64  CPDGLKLLSDGLMCVEKDSIHSIDGD 89


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 152 ILEAICLSKRLVLCLCVNKGAKARQDHK 69
           I  A+CL++R +     N+  K +++HK
Sbjct: 41  IAHALCLTERQIKIWFQNRRMKWKKEHK 68


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 567 QHRSRRLHQAIRSGRSQN*KPVRRDIQNRSLHRSR 463
           QH S R  +  R  R +N +  ++D Q   LH  +
Sbjct: 225 QHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEK 259


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 30  TCQYTCCADMERTFVILTCFCAFVY 104
           TC +    D E T V +TC   + Y
Sbjct: 205 TCSFDFLTDDEDTKVFVTCIFIWAY 229


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 69  FVILTCFCAFVYTQTQ 116
           F++L  FCA  Y   Q
Sbjct: 3   FIVLVLFCAVAYVSAQ 18


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -1

Query: 379 GCSEDRSRHGTSLGYWHGYTSKFTLG 302
           GC       G++L  W    +  TLG
Sbjct: 19  GCGPPEEETGSNLPVWEAAAASLTLG 44


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -1

Query: 379 GCSEDRSRHGTSLGYWHGYTSKFTLG 302
           GC       G++L  W    +  TLG
Sbjct: 19  GCGPPEEETGSNLPVWEAAAASLTLG 44


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 381 PQPTELCPHQFGYF 422
           P  T+ CP QFG F
Sbjct: 138 PMDTQRCPLQFGSF 151


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 14  CEDRSNVSVHLLCRHGEDFCDLDVLLRLCL 103
           CED     VH    H  D CD+ +  +LC+
Sbjct: 117 CED----DVHRKFLHVNDECDVALSFKLCM 142


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -1

Query: 379 GCSEDRSRHGTSLGYWHGYTSKFTLG 302
           GC       G++L  W    +  TLG
Sbjct: 19  GCGPPEEETGSNLPVWEAAAASLTLG 44


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 30  TCQYTCCADMERTFVILTCFCAFVY 104
           TC +    D E T V +TC   + Y
Sbjct: 205 TCSFDFLTDDEDTKVFVTCIFIWAY 229


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 365 SFETRHFVRVLARIYIEIHVGIVTETIG 282
           +F+ +   R   RIY  IH G V  T G
Sbjct: 304 NFDIQDLERWRDRIYEAIHTGSVINTRG 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,557
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)