Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o06f
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15060.1 68417.m02314 F-box protein-related contains weak sim... 31 0.58
At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.1
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 29 3.1
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 28 5.4
At1g01570.1 68414.m00074 fringe-related protein + similar to hyp... 28 5.4
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At4g00300.1 68417.m00037 fringe-related protein + weak similarit... 27 7.2
At3g58860.1 68416.m06560 F-box family protein contains F-box dom... 27 9.5
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 27 9.5
>At4g15060.1 68417.m02314 F-box protein-related contains weak
similarity to F-box domain Pfam:PF00646
Length = 572
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 228 SCDRYIECINGTAEEKLCPDGLRYNPNVNFDVYPC 332
S R CI AEE L PDG+ +N N + PC
Sbjct: 25 SVKRLSLCIRVNAEEALYPDGIVFNQLENLKLCPC 59
>At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 298
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 174 VRPTGQCRELNE---RYPVSGSCDRYIECINGTAE 269
V P+G C ++NE R+ V G C + E + GT E
Sbjct: 252 VTPSGNCTDMNESCERWAVLGECTKNPEYMVGTTE 286
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 325 IRASTLTKCRVSNDPRYSHRNRQNCVPINSDTSN-*ATPAIAADSE 459
+R+ + R S +PRY H++ + P S TS+ ATP A+ SE
Sbjct: 1501 MRSPINRRFRASQEPRYDHQSPRPAEPAASVTSSKAATPETASVSE 1546
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 128 KRLVLCLCVNKGAKARQD 75
KRL L C++KG+K+RQD
Sbjct: 583 KRLTLRYCLSKGSKSRQD 600
>At1g01570.1 68414.m00074 fringe-related protein + similar to
hypothetical protein GB:AAC23643 [Arabidopsis thaliana]
+ weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 478
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 393 LSVAVAVARIVRDTALR*GTGTDIHRNSRWDCNGD 289
L A+ + RIV +T +R GT++ +N RW GD
Sbjct: 126 LRSAIRITRIVSET-VRLLNGTELEKNVRWIVMGD 159
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 105 TQTQYQPFGQTNRFQNQ-YQEQAPVRPTG 188
+Q Y+P+GQ N QNQ Y +QAP TG
Sbjct: 72 SQISYRPYGQ-NYHQNQYYPQQAPPYFTG 99
>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 785
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 384 AVAVARIVRDTALR*GTGTDIHRNSRWDCNGD 289
A+ + RIV +T +R GT+ RN RW GD
Sbjct: 154 AIRITRIVSET-VRMLNGTEAERNVRWVVMGD 184
>At3g58860.1 68416.m06560 F-box family protein contains F-box domain
Pfam:PF00646
Length = 457
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 387 VAVAVARIVRDTALR*GTGTDIHRNSRWDCNGDHRGIVSLQRF 259
+A+ A ++ +L TG D R RW CN RG+ L F
Sbjct: 81 LALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHLALF 123
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 93 AFVYTQTQYQPFGQTNRFQNQYQEQAPVRPTGQCRELNE 209
A +YT+ P +R+ + ++E A RP + R E
Sbjct: 228 ALIYTRILENPIQNLDRYFSSFKELAETRPLSELRSAEE 266
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,971,485
Number of Sequences: 28952
Number of extensions: 316833
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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