Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o05f
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 143 7e-35
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.038
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.9
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.9
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 1.9
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 1.9
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.5
AC024863-1|AAF60877.1| 481|Caenorhabditis elegans Prion-like-(q... 29 2.5
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 28 3.3
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 3.3
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 3.3
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 28 4.3
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 5.7
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 27 5.7
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 7.6
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 7.6
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 7.6
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 7.6
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 7.6
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 7.6
Z83128-4|CAB05639.1| 348|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 10.0
Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical pr... 27 10.0
U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical pr... 27 10.0
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 10.0
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 10.0
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 143 bits (346), Expect = 7e-35
Identities = 71/135 (52%), Positives = 89/135 (65%), Gaps = 1/135 (0%)
Frame = +1
Query: 43 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 219
M+D +V P ++ MD AL+ VL+ A GL GLHE KALDKR+A CVL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 220 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 399
AENCDE Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120
Query: 400 DFGEETPALDVLKDY 444
++G E +L DY
Sbjct: 121 NWGNEEQGRAILTDY 135
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 154 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 249 LVCGFITVLSQNT*YCLPLVKSFSGFVK 166
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 249 LVCGFITVLSQNT*YCLPLVKSFSGFVK 166
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 160 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 160 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 321
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 271 NEHQIPLVKVDNNKKLGEWAGLCK 342
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>AC024863-1|AAF60877.1| 481|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform a protein.
Length = 481
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 161 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVL 18
C PW IK +T C S+L P + GLVG T+ +++ LT L
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILTFL 377
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = -1
Query: 346 QSCRDQPILQAFCCCQP*PV----ESDVRC--TEPEQVSCMRLHHSSQPKHIVLLASC 191
QSC P +Q C CQ P E+ C T P Q SC Q ++V + C
Sbjct: 27 QSCGCAPKVQPSCSCQQTPYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 172 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 336
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 148 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 255
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 103 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 246
V VAL + T LIH +H L++ K L V C+L ++ +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 334 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 441
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 269 ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 433
+T+ + RL G V+AR+T +A G A S ++ R W C
Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 76 PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 189
P+ +G + E+L+T +I +HG EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 STTMADVEVEVP--TNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKR 198
ST+M+ E P +NP + NM + VA A++ L G+H+AAK L+K+
Sbjct: 172 STSMSGAECSAPFLSNPYV---NMGMYVAYYWTTLVAMLI--LYKGIHQAAKNLEKK 223
>Z83128-4|CAB05639.1| 348|Caenorhabditis elegans Hypothetical
protein W01D2.5 protein.
Length = 348
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 146 WIKAVFSTSCSATFTSMLLP 87
W+ AVF +CS +F +M +P
Sbjct: 87 WLIAVFPVACSCSFIAMCVP 106
>Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical
protein W02A11.8 protein.
Length = 266
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 331 GLCKIDKDGKARKIVGCSCVVIKDFGEET 417
G C I+ D K VG + ++DFGEET
Sbjct: 80 GKCTIEADITIIKEVGDARAKLRDFGEET 108
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 229 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 354
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical
protein C33A12.1 protein.
Length = 150
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 205 VLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNN-KKLGEWAGLCKIDK 351
+L L + +AAY+K +A+ + ++ LV+ +N+ KKL E G+ +I++
Sbjct: 65 ILRALEQIPRDAAYRKYTEAVVKQ-RLALVQAENDIKKLEEKIGMGQIEE 113
>U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical
protein F12D9.2 protein.
Length = 163
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 100 DVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQ 261
D+N ++ LKT + G L A +AL KR L +L D A KK+ Q
Sbjct: 54 DLNTSIINWLKTGIEEGDLEGAAQRAIEALRKRNEELKLL--EMDPNAMKKVEQ 105
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 229 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 354
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 229 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 354
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,711
Number of Sequences: 27780
Number of extensions: 246546
Number of successful extensions: 742
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -