Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o04r
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.0  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   6.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.0  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   8.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 144 HCTNI*TCTSYAPHIT 191
           H +NI  C +Y PHI+
Sbjct: 322 HLSNIEDCLNYVPHIS 337


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 729 VHLTDGDSEIIDSLMKDEDGRKQLRITQRLRLDQPKLDDVQKR 601
           V++T+   E +   MK+ DG+  + +T+   L+ P+ ++ +K+
Sbjct: 508 VYMTEPIDEYVVQQMKEFDGKTLVSVTKE-GLELPEDEEEKKK 549


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 206 YSCDVCDVRCIRCASLNICAVLCSHSD 126
           + C+ CD  C+  + LN  + + SHS+
Sbjct: 259 FQCNKCDYTCVNKSMLN--SHMKSHSN 283


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 206 YSCDVCDVRCIRCASLNICAVLCSHSD 126
           + C+ CD  C+  + LN  + + SHS+
Sbjct: 17  FQCNKCDYTCVNKSMLN--SHMKSHSN 41


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 272 YCIVICRYILLI*VFCSTLFTLYSCDVC 189
           YC+ I   + L+ + CS  FT++    C
Sbjct: 60  YCVSITFNVHLLFLLCSGYFTVHLLFYC 87


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -3

Query: 588 SSHAIFVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKEAAG 463
           S+H+  +    +  +  + D+  Q   +  LV Y+K+ +  G
Sbjct: 144 SAHSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLG 185


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -3

Query: 588 SSHAIFVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKEAAG 463
           S+H+  +    +  +  + D+  Q   +  LV Y+K+ +  G
Sbjct: 458 SAHSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLG 499


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -3

Query: 588 SSHAIFVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKEAAG 463
           S+H+  +    +  +  + D+  Q   +  LV Y+K+ +  G
Sbjct: 691 SAHSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLG 732


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -3

Query: 588 SSHAIFVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKEAAG 463
           S+H+  +    +  +  + D+  Q   +  LV Y+K+ +  G
Sbjct: 691 SAHSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLG 732


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,729
Number of Sequences: 336
Number of extensions: 3699
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)