Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o04r
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1573 - 34533973-34535595                                         29   3.0  
01_01_0950 - 7460351-7460392,7460869-7461094,7461352-7461672,746...    29   4.0  
02_03_0335 + 17882461-17882527,17882616-17884723                       29   5.2  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    28   9.2  

>04_04_1573 - 34533973-34535595
          Length = 540

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/86 (20%), Positives = 35/86 (40%)
 Frame = -3

Query: 741 FPTKVHLTDGDSEIIDSLMKDEDGRKQLRITQRLRLDQPKLDDVQKRIATSSSHAIFVGV 562
           F +  H     + ++D+  +D DG   LR+ +R+R   P          ++ S     G 
Sbjct: 46  FSSSPHTLHDYNRLLDAFARDGDGDAALRVLRRMRHSSPACAPTAASYTSAMSALAKAGR 105

Query: 561 SGSTAVVTNEDVSIQTRPMRNLVSYL 484
               A + ++ ++    P R   S+L
Sbjct: 106 PADAAALFDDMLANGVAPDRCAFSFL 131


>01_01_0950 -
           7460351-7460392,7460869-7461094,7461352-7461672,
           7461750-7461941,7462054-7462262
          Length = 329

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 549 AVVTNEDVSIQTRPMRNLVSYLKQKE-AAGVISLL 448
           A + N D S++    R + S LKQ E AAG+I  L
Sbjct: 2   AAIANNDTSVEEAEQRTIQSILKQDETAAGIICQL 36


>02_03_0335 + 17882461-17882527,17882616-17884723
          Length = 724

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = -3

Query: 690 LMKDEDGRKQLRITQRLRLDQPKLDDVQKRIATSSSHAIFVGVSGSTAVVTNEDVS--IQ 517
           LM+D D +K  +I   L   +P +         + +H ++VG S S      ED++   Q
Sbjct: 417 LMEDADWQKGFQINDILTDSEPPIYSATPVEEPTKTHLLYVGSSPSHLEPAWEDMNSWYQ 476

Query: 516 TRPMRNLVSYLKQKEAAGVISLLNKETEATGVLYSFPPC 400
            +    +++ +KQ+   G+ S    +  A+G +    PC
Sbjct: 477 VQRQTKVLTLMKQR---GISSRYVPQMVASGRVVHPGPC 512


>01_06_0866 -
           32572002-32572541,32572806-32572984,32574330-32574430,
           32574554-32574887,32574915-32575037,32575193-32575394,
           32575915-32576097,32576332-32576436,32576553-32576760,
           32577025-32577170,32577321-32577443,32577490-32577698,
           32577931-32578152,32578189-32578198,32578710-32578763,
           32580841-32581052,32581620-32581772,32582071-32582158,
           32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 441 ETEATGVLYSFPPC-EFSTDLLKRTCHNLTEESFKEDHLVI 322
           E  ATG+ Y+F PC     D     C+    ES+ EDH V+
Sbjct: 539 EVRATGIPYTFAPCIAVCRDPRWGRCY----ESYSEDHRVV 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,395
Number of Sequences: 37544
Number of extensions: 317890
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)