Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o04r
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)               130   2e-30
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               34   0.14 
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         31   1.3  
SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)                      31   1.3  
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)                  29   4.1  
SB_28129| Best HMM Match : HR1 (HMM E-Value=6.7)                       28   7.1  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      28   9.4  
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)                        28   9.4  

>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score =  130 bits (313), Expect = 2e-30
 Identities = 70/145 (48%), Positives = 99/145 (68%), Gaps = 9/145 (6%)
 Frame = -3

Query: 714  GDSEIIDSLMKDEDGRKQ-LRITQRLRLDQPKLDDVQKRIATS--SSHAIFVGVSGSTAV 544
            G+ EI DSL++++   K  LRITQRLRLDQPKL++V +RI T+  S H + + + G+   
Sbjct: 637  GNPEIADSLIRNDGSTKSSLRITQRLRLDQPKLEEVSRRINTAGASGHCLLLALPGTQIQ 696

Query: 543  VTNEDVSIQTRPMRNLVSYLKQKEAAGVISLLNKETEAT------GVLYSFPPCEFSTDL 382
            +      +Q RP+RNL++YLKQK+AAGV++L    + +T      GVL++FPPC+FS + 
Sbjct: 697  LPESTEELQHRPLRNLMTYLKQKQAAGVVNLPVSPSNSTNAKDDVGVLHAFPPCQFSHEH 756

Query: 381  LKRTCHNLTEESFKEDHLVIVVVRG 307
            L R   +L+ E  KEDHLVIVVVRG
Sbjct: 757  LLRIAPHLSAEPSKEDHLVIVVVRG 781


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 278 LVYCIVICRYIL-LI*VFCSTLFTLYSCDVCDVRCIRCASLNICAVLC 138
           ++YC+V+CR +L  + + C  L  +  C V     + C  +  C VLC
Sbjct: 434 VLYCVVLCRVVLYCVKLCCVVLHCVVLCCVVPCCVVLCCVVLYCVVLC 481



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 269 CIVICRYILLI*VFCSTL-FTLYSCDVCDVRCIRCASLNICAVLC 138
           C V+CR +    V C  +   +  C     R + C +++ CAVLC
Sbjct: 337 CAVLCRAVSCRVVLCCVVPCCVVLCCAVSCRAVLCRAVSCCAVLC 381



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 278 LVYCIVICRYILLI*VFC-STLFTLYSCDVCDVRC 177
           ++YC+V+CR +L   V C + L  +     C V C
Sbjct: 474 VLYCVVLCRVVLCRDVLCRAALCRVVQLSCCAVSC 508


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 278 LVYCIVICRYILLI*VFCSTLFTLYSCDVCDVRCIRCASLNICAV 144
           +V C   CRY+  + V C+ +  +  C VC  R ++   + +CAV
Sbjct: 318 VVMCACACRYVHSVCVMCACV-RVVMCAVCACRYLQSGGVVMCAV 361


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 612  VQKRIATSSSHAIFVGVSGSTAVVTNEDVSIQTRPMRNL-VSYLKQKEAAGVISLLNKE 439
            +Q+R    S H   +  +GST+  T  D SI++  +  + ++Y    E A V S+ +KE
Sbjct: 1496 IQRRRRKESQHVERLSTAGSTSTRTTADTSIRSGILPGVQITYRDPNEEAEVSSISDKE 1554


>SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)
          Length = 420

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = -3

Query: 660 LRITQRLRLDQPKLDDVQKRIATSSSHAIFVGVSGSTAVVTNEDVSIQTRPMRNLVSYLK 481
           L   + L L++ K    + R  T      F G        T  + S  T+ +   VSY K
Sbjct: 238 LNKAEELDLEKKKTGSSEAREVTVDQFDEFAGSDNKETFFTASERSYLTKNIVEDVSYEK 297

Query: 480 QKEAAGVISLLNKETEATGVLYSFPP 403
           +K ++  +SL +  +  T  L+S PP
Sbjct: 298 EKLSSFGVSLRDSGSFLTECLHSKPP 323


>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
          Length = 129

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 269 CIVICRYILLI*VFCSTLFTLYSCDVCDVRCIRCASLNICAV 144
           C+++C   L + V C+     Y   VC   C +C  + +CAV
Sbjct: 80  CLLLCAQCLRV-VICAVCACRYVRSVCVSLCAQCLRVVMCAV 120


>SB_28129| Best HMM Match : HR1 (HMM E-Value=6.7)
          Length = 228

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 526 NIFIGDYSSRTRHTHKNGMRARCGNTFLNII*LRLIQT*SLCDSELFSTIFIFHE 690
           NI  GD S  T+ THK   ++R  +   N++ +R +    +      ST  I+H+
Sbjct: 46  NIIDGDESQNTQDTHKEETKSRIASDKENLLSIREMLNLCIDSLTAISTRQIYHK 100


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 314 YEVALLNYSNTALVYCIVICRYILLI*VFCSTLFTL-YSCDVCDVRCIRCASLNICAVLC 138
           + + ++ Y    L+    +C  +L++   C TL  + Y C    V C  C +L +   LC
Sbjct: 166 FTLLVMGYLCCTLLVMGYLCCSLLVMGYLCCTLLVMDYLCFTLLVMCYLCCTLLVMDYLC 225



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 302 LLNYSNTALVYCIVICRYILLI*VFCSTLFTL-YSCDVCDVRCIRCASLNICAVLC 138
           ++ Y    L+    +C  +L++   C TL  + Y C    V C  C +L +   LC
Sbjct: 320 VMGYLCCTLLVMGYLCCSLLVMGYLCCTLLVMDYLCFTLLVMCYLCCTLLVMGYLC 375


>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 490

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 573 FVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKEAAGVIS 454
           F+ VS S   +    +    R  RN+V + K+K  AGV+S
Sbjct: 395 FIDVSQSVEPIHPHALEFLYRDCRNVVEFFKKKGVAGVMS 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,146,266
Number of Sequences: 59808
Number of extensions: 420225
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)