Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o04r
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.58 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.58 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.58 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 218 LFTLYSCDV---CDVRCIRCASLNICAV 144
           +F ++ C +   CDV C   + LN+CA+
Sbjct: 103 IFGIHLCKLWLTCDVLCCTASILNLCAI 130


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 218 LFTLYSCDV---CDVRCIRCASLNICAV 144
           +F ++ C +   CDV C   + LN+CA+
Sbjct: 103 IFGIHLCKLWLTCDVLCCTASILNLCAI 130


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 218 LFTLYSCDV---CDVRCIRCASLNICAV 144
           +F ++ C +   CDV C   + LN+CA+
Sbjct: 103 IFGIHLCKLWLTCDVLCCTASILNLCAI 130


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 546  VVTNEDVSIQTRPMRNLVSYLKQKEAA 466
            VVTN+  SIQT  M+ +++ +  K  A
Sbjct: 1069 VVTNQQQSIQTSGMQRIIAQIGGKPIA 1095


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 684 KDEDGRKQLRITQRLRLDQ 628
           ++EDGR Q    +RL+LD+
Sbjct: 288 EEEDGRGQSEAEKRLKLDE 306


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 271 IVLLFVGIYS*FKFFVLHFLLYILVM 194
           IVL F G++S F F +L    YI+++
Sbjct: 58  IVLAFSGLFSVFSFLIL-VSSYIVIL 82


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 462 HLLLLFV*DMIPNSSLVV-FVSKHL 533
           H+  L V ++IP +SLVV  + K+L
Sbjct: 287 HVFFLLVVEIIPPTSLVVPLLGKYL 311


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 462 HLLLLFV*DMIPNSSLVV-FVSKHL 533
           H+  L V ++IP +SLVV  + K+L
Sbjct: 287 HVFFLLVVEIIPPTSLVVPLLGKYL 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,019
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)