Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o04f
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   3.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   6.7  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   8.9  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.9  

>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 223 DPSESLSGDLRRDRERDLSTPGSLDPERRKRLSYSESNGA 104
           D S S SG LR       S+P +++  RRK    +  NGA
Sbjct: 113 DSSPSYSGALRSAERSISSSPSTIEARRRKSARGNGLNGA 152


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 25/95 (26%), Positives = 45/95 (47%)
 Frame = +3

Query: 315 LKNSLFPTKLHLTDGDSEIIDSLMKDEDGRKQLRITQRLRLDQPKLDDVQKRIATSSSHA 494
           +KNS    K H  DGD++++ S   D+  +     T+    + P     +  +AT+   A
Sbjct: 163 VKNSPIMKKSHEEDGDNKLLSS--SDQLAKS----TKHAAKNSPSKKKRKTSVATAED-A 215

Query: 495 IFVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKE 599
               VS S A+    D S+    M++L+S  K+++
Sbjct: 216 STDSVSSSIAI---SDASLSLSLMKDLLSLQKRED 247


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 202 GDLR-RDRERDLSTPGSLDPERRKRLSYSESNGARLHS 92
           GD R RDR+RD +     D +   R  Y ES  +R  S
Sbjct: 147 GDSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPS 184


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -1

Query: 457 SSNLG*SKRNLCVILSCFLPSSSFMRLSIISESPSVKCNLVGNNEFLRISAPCQIVVALR 278
           ++NL  S R L  + +  + SS F  L I       KCN++        +  C +++ L 
Sbjct: 358 TNNLIRSNRELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQVATIACSVLILLA 417

Query: 277 T 275
           T
Sbjct: 418 T 418


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 507 HPQKWHES*MWQYVF 463
           HPQ WH +  W  VF
Sbjct: 71  HPQNWHWAKRWSIVF 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,890
Number of Sequences: 5004
Number of extensions: 49946
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)