Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o04f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1573 - 34533973-34535595 29 3.0
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 29 3.0
01_01_0950 - 7460351-7460392,7460869-7461094,7461352-7461672,746... 29 3.0
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097... 28 5.2
07_03_1586 - 27929947-27930056,27930143-27930286,27930377-279307... 27 9.2
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 27 9.2
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 27 9.2
05_04_0019 + 17197271-17197445,17197937-17198067,17198129-171981... 27 9.2
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 27 9.2
>04_04_1573 - 34533973-34535595
Length = 540
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/86 (20%), Positives = 35/86 (40%)
Frame = +3
Query: 330 FPTKLHLTDGDSEIIDSLMKDEDGRKQLRITQRLRLDQPKLDDVQKRIATSSSHAIFVGV 509
F + H + ++D+ +D DG LR+ +R+R P ++ S G
Sbjct: 46 FSSSPHTLHDYNRLLDAFARDGDGDAALRVLRRMRHSSPACAPTAASYTSAMSALAKAGR 105
Query: 510 SGSTAVVTNEDVSIQTRPMRNLVSYL 587
A + ++ ++ P R S+L
Sbjct: 106 PADAAALFDDMLANGVAPDRCAFSFL 131
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -1
Query: 334 GNNEFLRISAPCQIVVALRTNSAIVRDEDSIPLLLRIDPSESLSGDLRRDRERDLSTPGS 155
GNN ++ PC+ + I+R + +L ID +E +G + D + +L
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSIL--IDNTEKRTGSIYGDCD-NLPPKKK 571
Query: 154 LDPERRK 134
DPE +K
Sbjct: 572 KDPEAKK 578
>01_01_0950 -
7460351-7460392,7460869-7461094,7461352-7461672,
7461750-7461941,7462054-7462262
Length = 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 522 AVVTNEDVSIQTRPMRNLVSYLKQKE-AAGVISLL 623
A + N D S++ R + S LKQ E AAG+I L
Sbjct: 2 AAIANNDTSVEEAEQRTIQSILKQDETAAGIICQL 36
>06_03_0902 -
25806912-25807190,25807876-25808094,25809469-25809711,
25809810-25809974,25810141-25810721,25810940-25811048,
25811158-25811250,25811474-25811535,25811895-25811967,
25812879-25813007,25814107-25814229
Length = 691
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 256 DEDSIPLLLRIDPSESLSGDLRRDRERDLSTPG 158
D DS P R D +ES+ DL R +LS PG
Sbjct: 270 DHDSNPGHARKDSAESIGSDLSSLRGSELSVPG 302
>07_03_1586 -
27929947-27930056,27930143-27930286,27930377-27930704,
27931189-27931404,27932099-27932284,27932439-27932521,
27932621-27932752,27932943-27932999,27933352-27933412,
27933807-27933889,27933975-27934134
Length = 519
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 22 VGIVAVDVAPTEVSIMVQEIIVTKNGDVLH*IQNMRVACVVLDQGSLE 165
+G++ DV EVS + + + VL Q R AC +L+ GS E
Sbjct: 128 IGMLPRDVKENEVSALFSQYGNIRQLKVLRSPQKTRKACAILEFGSKE 175
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 345 HLTDGDSEIIDSLMKDEDGRKQLRITQRLRLDQPKLDDV 461
H G +++ +L DE+G + L IT RLD P ++D+
Sbjct: 3 HGGGGRAKVTPNLAMDEEGTRVLNITVLQRLD-PAVEDI 40
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -1
Query: 421 VILSCFLPSSSFMRLSIISESPSVKCNLVGNNEFLRISAPCQIVVALRTNSAIVRDEDSI 242
V+L+C ++ + SP +K + + N LR+ C I++ V D+D +
Sbjct: 121 VVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRVVQNCDILL----EDVFVPDDDRL 176
Query: 241 P 239
P
Sbjct: 177 P 177
>05_04_0019 +
17197271-17197445,17197937-17198067,17198129-17198164,
17198196-17198333,17198503-17198601,17198750-17199124
Length = 317
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 366 EIIDSLMKDEDGRKQLRITQRLRLDQPKLDDVQKRIATSSS 488
++IDS KD R+++R + + D+P+L + + TS S
Sbjct: 146 DVIDSAFKDPIKREKIRKNKLIYQDKPRLKTALELLRTSIS 186
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 396 DGRKQLRITQRLRL--DQPKLDDVQKRIATSSSHA 494
DGRK+L++ ++P++D+ +KR++ + SH+
Sbjct: 293 DGRKKLKLVDSDDFIEEEPEMDEPKKRLSEADSHS 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,487
Number of Sequences: 37544
Number of extensions: 307157
Number of successful extensions: 980
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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